Locus 7925

Sequence ID 3R_DroMel_CAF1
Location 21,252,665 – 21,252,781
Length 116
Max. P 0.705283
window12762

overview

Window 2

Location 21,252,665 – 21,252,781
Length 116
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 89.73
Mean single sequence MFE -20.18
Consensus MFE -14.57
Energy contribution -14.82
Covariance contribution 0.25
Combinations/Pair 1.14
Mean z-score -1.99
Structure conservation index 0.72
SVM decision value 0.36
SVM RNA-class probability 0.705283
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21252665 116 + 27905053
ACAUUUUGCUUU---U-UUUCCACCUUUCAGUCUUAUUUACUCGAUUUUUUUUCGCAAUCCUUGUAUAGGGACAAUUUCACACAUCUGUUCCUCAAUUGGACUGAAGAAAAAUAGAAAAA
...((((.((.(---(-((((.....((((((((.(((....(((.......)))............(((((((............))))))).))).)))))))))))))).)))))). ( -20.40)
>DroSec_CAF1 77759 117 + 1
ACUUUUUGCUUUAUUU-UGUCCACCUUUCAGUCUUAUUUACUCGAUUU--UUUCGCCAUCCUUGUAUAGGGACAAUUUCACACAUCUGUUCCUCAAUUGGACUGAAGAAAAAUAGAAAAA
.........(((((((-(.((.....((((((((.(((....(((...--..)))............(((((((............))))))).))).)))))))))))))))))).... ( -19.10)
>DroSim_CAF1 80439 117 + 1
ACUUUUUGCUUUAUUU-UUUCCACCUUUCAGUCUUAUUUACUCGAUUU--UUUCGCCAUCCUUGUAUAGGGACAAUUUCACACAUCUGUUCCUCAAUUGGACUGAAGAAAAAUAGAAAAA
.........(((((((-(((......((((((((.(((....(((...--..)))............(((((((............))))))).))).)))))))))))))))))).... ( -20.90)
>DroYak_CAF1 87310 118 + 1
ACUCUUUUCUGCUUUUCCCCCCAACUUUUCGUCUUAUUUGCUCAAUUU--UUUCACCUUCCUGGUAUAGGGACAAUUUCACACAUCUGUUCCUCAAUUGGACUGAAGAAAAAUAGAAAAA
....(((((((.(((((..........(((((((...(((........--....(((.....)))..(((((((............))))))))))..)))).)))))))).))))))). ( -20.30)
>consensus
ACUUUUUGCUUUAUUU_UUUCCACCUUUCAGUCUUAUUUACUCGAUUU__UUUCGCCAUCCUUGUAUAGGGACAAUUUCACACAUCUGUUCCUCAAUUGGACUGAAGAAAAAUAGAAAAA
.........................(((((((((.(((................(((.....)))..(((((((............))))))).))).)))))))))............. (-14.57 = -14.82 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:58:10 2006