Locus 7923

Sequence ID 3R_DroMel_CAF1
Location 21,249,252 – 21,249,348
Length 96
Max. P 0.952862
window12760

overview

Window 0

Location 21,249,252 – 21,249,348
Length 96
Sequences 5
Columns 105
Reading direction forward
Mean pairwise identity 84.07
Mean single sequence MFE -20.96
Consensus MFE -15.16
Energy contribution -17.04
Covariance contribution 1.88
Combinations/Pair 1.17
Mean z-score -2.47
Structure conservation index 0.72
SVM decision value 1.43
SVM RNA-class probability 0.952862
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21249252 96 + 27905053
AAAACGACUGACAGAACAGAAAAAGUGCAUCAGCAAUUCCAUUUUCUGUUUUACCUCCGACAUUUCUAAUUCCUCUGCAUA---------GCAGAGGAAACAAAC
....((...(..(((((((((((..(((....)))......)))))))))))..)..))..........(((((((((...---------)))))))))...... ( -25.30)
>DroSec_CAF1 74110 99 + 1
-----GACUGACAGAACAGAAAAAGUGCAUCAGCAAUUCCAUUUUCUGUUUUACCUCCGACAUUUCUAAUUCCUCUGCAUAGCAU-CAUAGCAGAGGAAACAAAC
-----.......(((((((((((..(((....)))......))))))))))).................(((((((((.((....-..)))))))))))...... ( -26.20)
>DroSim_CAF1 76432 104 + 1
AAAACGACUGACAGAACAGAAAAAGUGCAUCAGCAAUUCCAUUUUCUGUUUUACCUCCGACAUUUCUAAUUCCUCUGCAUAGCAU-CCUAGCAGAGGAAACAAAC
....((...(..(((((((((((..(((....)))......)))))))))))..)..))..........(((((((((.(((...-.))))))))))))...... ( -27.80)
>DroEre_CAF1 78191 97 + 1
-----AACUGACA---CAGAAAAAGUGCAUUCGCAAUUCCAAUUUCAUUUUUACCUCCGACAUUUCUAAUUCCUCUGCAUAGCAUGCGUUGUAUGUGCAACAAAC
-----..(((...---)))......(((((..(((((.....................((....))..........((((...)))))))))..)))))...... ( -10.50)
>DroYak_CAF1 83633 105 + 1
UAAUCAACUGACAGCGCGGAAAAAGUGCAUUCGCAAUUCCAUUUUCUGUUUUACCUCCGACAUUUCUAAUUCCUCUGCAUAGCACGCAUUGUAUGUGCAACAAAC
.........(((((...((((....(((....))).)))).....))))).........................(((((((((.....))).))))))...... ( -15.00)
>consensus
_AA_CGACUGACAGAACAGAAAAAGUGCAUCAGCAAUUCCAUUUUCUGUUUUACCUCCGACAUUUCUAAUUCCUCUGCAUAGCAU_CAUAGCAGAGGAAACAAAC
............(((((((((((..(((....)))......))))))))))).................(((((((((............)))))))))...... (-15.16 = -17.04 +   1.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:58:08 2006