Locus 7922

Sequence ID 3R_DroMel_CAF1
Location 21,248,650 – 21,248,750
Length 100
Max. P 0.891250
window12759

overview

Window 9

Location 21,248,650 – 21,248,750
Length 100
Sequences 5
Columns 106
Reading direction forward
Mean pairwise identity 77.42
Mean single sequence MFE -17.59
Consensus MFE -6.04
Energy contribution -7.64
Covariance contribution 1.60
Combinations/Pair 1.20
Mean z-score -2.18
Structure conservation index 0.34
SVM decision value 0.97
SVM RNA-class probability 0.891250
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21248650 100 + 27905053
CAGGUGCCCUUUGGCUA-----UAUGCCAUCCAAAAUGCAAAUUUUGAAAAUUUUU-UUUUUCAACUUUGAGGCCGCCUCUCCAUUCCUUUUAAUUAAAAAGUUUU
.(((((.(((.((((..-----...)))).........((((..(((((((.....-.))))))).))))))).)))))........(((((.....))))).... ( -21.00)
>DroSim_CAF1 75838 98 + 1
CAGGUGCCCUUUGGCUA-----UAUGCCAUCCAAAAUGCAAAUUUUGAAAACAUU---UUUUCAACUUUGAGGCCGCCUCUCCAUUCCUUUUAAUUAAAAAGUUUU
.(((((.((((((((..-----...))))..((((((....))))))........---...........)))).)))))........(((((.....))))).... ( -19.90)
>DroEre_CAF1 77558 99 + 1
CAGGUGCCCUUUGGCUA-----UAUGCCAUCGA-AAUGCAAAUUUUGAAAAAAAAA-UUUUCCAACUUUGGUACCGCCUCUCCAUUCCUUUUAAUUAAAAAGUUUU
..((((((...((((..-----...))))((((-(((....)))))))........-............))))))............(((((.....))))).... ( -20.90)
>DroYak_CAF1 82999 105 + 1
CAGGUGCCCUUUGGCUAUACUAUAUGCCAUCCA-AAUGCAAAUUUUGAAAUUUUUUUUGUUUUAACUUUGGUGCCGCCUCUCCAUUCCUUUUAAUUAAAAAGUUUU
..((..((...((((..........))))....-..........(((((((.......)))))))....))..))............(((((.....))))).... ( -16.30)
>DroAna_CAF1 68656 81 + 1
---------UUUGCUUCC----AAAGCCAUCCA-AAUGCAAAUUUCCAAUUUUUUG-----UUGGCUU-----GCGACU-UUUAUUCCUUUUAAUUAAAAAGUUUU
---------...(((...----..)))......-...((((....(((((.....)-----)))).))-----))((((-(((..............))))))).. (  -9.84)
>consensus
CAGGUGCCCUUUGGCUA_____UAUGCCAUCCA_AAUGCAAAUUUUGAAAAUUUUU_UUUUUCAACUUUGAGGCCGCCUCUCCAUUCCUUUUAAUUAAAAAGUUUU
.(((((.....((((..........)))).........((((..(((((((.......))))))).))))....)))))........(((((.....))))).... ( -6.04 =  -7.64 +   1.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:58:07 2006