Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 21,246,669 – 21,246,761 |
Length | 92 |
Max. P | 0.722040 |
Location | 21,246,669 – 21,246,761 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 82.80 |
Mean single sequence MFE | -16.71 |
Consensus MFE | -13.49 |
Energy contribution | -14.02 |
Covariance contribution | 0.53 |
Combinations/Pair | 1.05 |
Mean z-score | -1.71 |
Structure conservation index | 0.81 |
SVM decision value | 0.40 |
SVM RNA-class probability | 0.722040 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 21246669 92 + 27905053 CUCGAGCGAUUUCGAGAUUGGUUGCCC-UAACAACAA--AA-AAAAGCUAACUUGAGAAAAGAAAAGGUAACCAAGCAUUAAAUUAAAG-----ACUUUAA ((((((....)))))).(((((((((.-.........--..-..(((....)))............)))))))))..............-----....... ( -16.77) >DroSec_CAF1 71499 91 + 1 CUCGAGCAAUUUCGAGAUUGGUUGCCC-UAACAACAA--A--AAAAGCUAACUGGAGAAAAGGAAAGGUAACCAAGCAUUAAAUUAAAG-----ACUUUAA ((((((....)))))).(((((((((.-.........--.--...((....)).............)))))))))..............-----....... ( -16.33) >DroSim_CAF1 73848 93 + 1 CUCGAGCAAUUUCGAGAUUGGUUGCCC-UAACAACAA--AAAAAAAGCUAACUGGAGAAAAGGAAAGGUAACCAAGCAUUAAAUUAAAG-----ACUUUAA ((((((....)))))).(((((((((.-.........--...........................)))))))))..............-----....... ( -15.49) >DroEre_CAF1 75545 88 + 1 CUCGAGCAAUUUCGAGAUUGGUUGCCC-UAACA-------AAAAAACCCAACUGGAGAAAAGGAAAGGUAACCAAGCAUUAAAUUAAAG-----ACUUUAA ((((((....)))))).(((((((((.-.....-------.......((....))...........)))))))))..............-----....... ( -17.45) >DroYak_CAF1 80955 95 + 1 CUCGAGCAAUUUCGAGAUUGGUUGCCC-UAACAACAACAAAAAAAACCAAACUGGAGAAAAGAAAAGGUAACCAAGCAUUAAAUUAAAG-----ACUUUAA ((((((....)))))).(((((((((.-......................................)))))))))..............-----....... ( -15.43) >DroAna_CAF1 66916 90 + 1 CUCGAACAGUUUCAACACUGGUUGCCCCCAACAGCAGCAGGGAA-----------AGGAGAAGAAAGGUAACCAAGCAUUAAAUUAAAGCCGAAGCUUUCC ...(((.((((((.....(((((((((((..........)))..-----------...........)))))))).((...........)).))))))))). ( -18.81) >consensus CUCGAGCAAUUUCGAGAUUGGUUGCCC_UAACAACAA__AAAAAAAGCUAACUGGAGAAAAGGAAAGGUAACCAAGCAUUAAAUUAAAG_____ACUUUAA ((((((....)))))).(((((((((........................................))))))))).........(((((......))))). (-13.49 = -14.02 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:58:06 2006