Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,712,066 – 2,712,185 |
Length | 119 |
Max. P | 0.658399 |
Location | 2,712,066 – 2,712,185 |
---|---|
Length | 119 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 93.04 |
Mean single sequence MFE | -34.59 |
Consensus MFE | -28.97 |
Energy contribution | -29.77 |
Covariance contribution | 0.81 |
Combinations/Pair | 1.13 |
Mean z-score | -1.83 |
Structure conservation index | 0.84 |
SVM decision value | 0.26 |
SVM RNA-class probability | 0.658399 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2712066 119 + 27905053 AGAACCCAAAUCAGCCAUUGACCUCAUGCAGCUGGGAAAUCGUUGGAAAAACAGGUUUUCCAACUCAUUUGAGUUUGGUCAGUCCGCCGUACAGGCGAUAAAU-UUCUACCUGUCAAUAG ((((............(((((((..........(((((((((((.....))).))))))))(((((....))))).))))))).((((.....))))......-))))............ ( -30.50) >DroSec_CAF1 22439 119 + 1 AGAACCCAAAUCAGCCAUUGACCCCAUGCAGCUGGGAAAUCGGUGGAAAAACUGGUUUUCCAACUCAUUUGAGUUUGGUCAGUCCGGCGUAUAGGCGAUAAAU-UUCUACCUGUCAAUAG .............((((((((((..........(((((((((((......)))))))))))(((((....))))).)))))))..)))(.(((((.((.....-.))..))))))..... ( -35.40) >DroSim_CAF1 23560 119 + 1 AGAACCCAAAUCAGCCAUUGACCCCAUGCAGCUGGGAAAUCGGUGGAAAAACUGGUUUUCCAACUCAUUUGAGUUUGGUCAGUCCGGCGUACAGGCGAUAAAU-UUCUACCUGUCAAUAG .............((((((((((..........(((((((((((......)))))))))))(((((....))))).)))))))..)))(.(((((.((.....-.))..))))))..... ( -37.30) >DroEre_CAF1 23493 120 + 1 AGAACCCAAAUCAGCCAUUGACCUCAUGCAGCUGGGAAAUCGGUGGGAAAACUGGUUUUCCAACUCAUUUGAGUUUGGUCAGUCCGGCGAACAGGCGAUAAAUUUUCUACCUGUCAAUAG .............((((((((((..........(((((((((((......)))))))))))(((((....))))).)))))))..)))((.((((.((.......))..))))))..... ( -37.20) >DroYak_CAF1 23290 120 + 1 AGAACCCAAAUCAGCCAUUGACCUCAUGCAGCUGGAAAAUCAGUGGGAAAACUGGUUUUCCAACUCAUUUCAGCUUGGUCAGUCCGGCGAACAGGCCAUACAUUUUCUACCUGUCAAUAG .............((((((((((....((((.((((((((((((......)))))))))))).)).......))..)))))))..)))((.((((..............))))))..... ( -35.35) >DroAna_CAF1 21401 120 + 1 AGAACCCAAAUCAGCCAUUGACCUCACGCAGCUGGGAAAAGGCUGGAAAAACUGGUUUUCCAACUCAUUUGAGCCUGGUCAGGCCGGCAUGCAGGCGAUAAAUUUUCUACCUGUCAAUAG ((((.....(((.(((..((....)).((((((((((..(((((.(((....(((....))).....))).)))))..))...))))).))).)))))).....))))............ ( -31.80) >consensus AGAACCCAAAUCAGCCAUUGACCUCAUGCAGCUGGGAAAUCGGUGGAAAAACUGGUUUUCCAACUCAUUUGAGUUUGGUCAGUCCGGCGUACAGGCGAUAAAU_UUCUACCUGUCAAUAG .............((((((((((.........((((((((((((......)))))))))))).(((....)))...)))))))..)))..(((((..............)))))...... (-28.97 = -29.77 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:16 2006