Locus 792

Sequence ID 3R_DroMel_CAF1
Location 2,712,066 – 2,712,185
Length 119
Max. P 0.658399
window1263

overview

Window 3

Location 2,712,066 – 2,712,185
Length 119
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 93.04
Mean single sequence MFE -34.59
Consensus MFE -28.97
Energy contribution -29.77
Covariance contribution 0.81
Combinations/Pair 1.13
Mean z-score -1.83
Structure conservation index 0.84
SVM decision value 0.26
SVM RNA-class probability 0.658399
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2712066 119 + 27905053
AGAACCCAAAUCAGCCAUUGACCUCAUGCAGCUGGGAAAUCGUUGGAAAAACAGGUUUUCCAACUCAUUUGAGUUUGGUCAGUCCGCCGUACAGGCGAUAAAU-UUCUACCUGUCAAUAG
((((............(((((((..........(((((((((((.....))).))))))))(((((....))))).))))))).((((.....))))......-))))............ ( -30.50)
>DroSec_CAF1 22439 119 + 1
AGAACCCAAAUCAGCCAUUGACCCCAUGCAGCUGGGAAAUCGGUGGAAAAACUGGUUUUCCAACUCAUUUGAGUUUGGUCAGUCCGGCGUAUAGGCGAUAAAU-UUCUACCUGUCAAUAG
.............((((((((((..........(((((((((((......)))))))))))(((((....))))).)))))))..)))(.(((((.((.....-.))..))))))..... ( -35.40)
>DroSim_CAF1 23560 119 + 1
AGAACCCAAAUCAGCCAUUGACCCCAUGCAGCUGGGAAAUCGGUGGAAAAACUGGUUUUCCAACUCAUUUGAGUUUGGUCAGUCCGGCGUACAGGCGAUAAAU-UUCUACCUGUCAAUAG
.............((((((((((..........(((((((((((......)))))))))))(((((....))))).)))))))..)))(.(((((.((.....-.))..))))))..... ( -37.30)
>DroEre_CAF1 23493 120 + 1
AGAACCCAAAUCAGCCAUUGACCUCAUGCAGCUGGGAAAUCGGUGGGAAAACUGGUUUUCCAACUCAUUUGAGUUUGGUCAGUCCGGCGAACAGGCGAUAAAUUUUCUACCUGUCAAUAG
.............((((((((((..........(((((((((((......)))))))))))(((((....))))).)))))))..)))((.((((.((.......))..))))))..... ( -37.20)
>DroYak_CAF1 23290 120 + 1
AGAACCCAAAUCAGCCAUUGACCUCAUGCAGCUGGAAAAUCAGUGGGAAAACUGGUUUUCCAACUCAUUUCAGCUUGGUCAGUCCGGCGAACAGGCCAUACAUUUUCUACCUGUCAAUAG
.............((((((((((....((((.((((((((((((......)))))))))))).)).......))..)))))))..)))((.((((..............))))))..... ( -35.35)
>DroAna_CAF1 21401 120 + 1
AGAACCCAAAUCAGCCAUUGACCUCACGCAGCUGGGAAAAGGCUGGAAAAACUGGUUUUCCAACUCAUUUGAGCCUGGUCAGGCCGGCAUGCAGGCGAUAAAUUUUCUACCUGUCAAUAG
((((.....(((.(((..((....)).((((((((((..(((((.(((....(((....))).....))).)))))..))...))))).))).)))))).....))))............ ( -31.80)
>consensus
AGAACCCAAAUCAGCCAUUGACCUCAUGCAGCUGGGAAAUCGGUGGAAAAACUGGUUUUCCAACUCAUUUGAGUUUGGUCAGUCCGGCGUACAGGCGAUAAAU_UUCUACCUGUCAAUAG
.............((((((((((.........((((((((((((......)))))))))))).(((....)))...)))))))..)))..(((((..............)))))...... (-28.97 = -29.77 +   0.81) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:16 2006