Locus 7917

Sequence ID 3R_DroMel_CAF1
Location 21,237,780 – 21,237,873
Length 93
Max. P 0.505866
window12749

overview

Window 9

Location 21,237,780 – 21,237,873
Length 93
Sequences 6
Columns 93
Reading direction reverse
Mean pairwise identity 96.06
Mean single sequence MFE -19.05
Consensus MFE -15.44
Energy contribution -15.63
Covariance contribution 0.19
Combinations/Pair 1.04
Mean z-score -2.07
Structure conservation index 0.81
SVM decision value -0.05
SVM RNA-class probability 0.505866
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21237780 93 - 27905053
GCAAAUGCGUUGGCACUUUAUUGCUUUUAUUUAUGUAAUUUGUAGCAUCUUCUUGUCAUUUACGAAGACAAACAUUUGCAUUUUCCAACUUAG
(((((((..(((((((...(((((..........)))))..)).)).(((((.((.....)).)))))))).))))))).............. ( -18.50)
>DroSec_CAF1 62543 93 - 1
GCAAAUGCGUUGGCACUUUAUUGCUUUUAUUUAUGUAAUUUGUAGCAUCUUCUUGUCAUUUACGAAGACAAACAUUUGCAUUUUCCAACUUAG
(((((((..(((((((...(((((..........)))))..)).)).(((((.((.....)).)))))))).))))))).............. ( -18.50)
>DroSim_CAF1 64730 92 - 1
GCAAAUGCGUUGGCACUUUA-UGCUUUUAUUUAUGUAAUUUGUAGCAUCUUCUUGUCAUUUACGAAGACAAACAUUUGCAUUUUCCAACUUAG
(((((((..(((........-((((.((((....)))).....))))(((((.((.....)).)))))))).))))))).............. ( -16.30)
>DroEre_CAF1 66376 93 - 1
GCAAAUGCCUUGCCACUUUAUUGCUUUUAUUUAUGUAAUUUGUAGCAUCUUCUUGUCAUUUACGAAGGCAAACAUUUGCAUUUUCCAACUUAG
(((((((..(((((......((((..........))))(((((((((......)))....))))))))))).))))))).............. ( -20.40)
>DroYak_CAF1 71763 93 - 1
GCAAAUGCGUUGGCACUUUAUUGCUUUUAUUUAUGUAAUUUGUAGCAUCUUCUUGUCAUUUACGAAGACAAACAUUUGCAUUUUCCAACUUAG
(((((((..(((((((...(((((..........)))))..)).)).(((((.((.....)).)))))))).))))))).............. ( -18.50)
>DroAna_CAF1 58304 93 - 1
GCAAAUGCGCUCGCACUUUAUUGCUUUUAUUUAUGUAAUUUGUAGCAUCUUCUUGUCAUUUAGGAAGACAAACAUUUGCAUUCCCCAACUUGC
(((((((.(((.(((....(((((..........))))).)))))).((((((((.....))))))))....))))))).............. ( -22.10)
>consensus
GCAAAUGCGUUGGCACUUUAUUGCUUUUAUUUAUGUAAUUUGUAGCAUCUUCUUGUCAUUUACGAAGACAAACAUUUGCAUUUUCCAACUUAG
(((((((.....((((...(((((..........)))))..)).)).(((((.((.....)).)))))....))))))).............. (-15.44 = -15.63 +   0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:57:58 2006