Locus 7916

Sequence ID 3R_DroMel_CAF1
Location 21,237,584 – 21,237,688
Length 104
Max. P 0.997062
window12748

overview

Window 8

Location 21,237,584 – 21,237,688
Length 104
Sequences 4
Columns 119
Reading direction forward
Mean pairwise identity 80.72
Mean single sequence MFE -21.77
Consensus MFE -15.27
Energy contribution -15.21
Covariance contribution -0.06
Combinations/Pair 1.19
Mean z-score -2.94
Structure conservation index 0.70
SVM decision value 2.79
SVM RNA-class probability 0.997062
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21237584 104 + 27905053
AUUAUUGGAUCUAUUAACAGAAAAAAU-----------UUCCAACUG----CAUUUAAUGUCUAUAAAUUGACAUCUUAAAAAUAUUUCAAAUACUUUCAGCGGCUUUCUGGCUGCAAU
....(((((..................-----------.)))))...----......(((((........))))).........................((((((....))))))... ( -16.51)
>DroSec_CAF1 62347 104 + 1
AUUAUUGGAUAUAUUAACAGGAAAUAU-----------AUCCAACUG----CAUUUAAUGUCAAUAAAUUGACAUCUUAAAAAUAUUCCAAAUACUUUCCGCGGCUUUCUGGCUGCAAU
....(((((((((((.......)))))-----------))))))...----......(((((((....))))))).........................((((((....))))))... ( -25.40)
>DroSim_CAF1 64534 104 + 1
AUUAUUGGAUCUAUUAACAGGAAAUAU-----------AUCCAACUG----CAUUUAAUGUCAAUAAAUUGACAUCUUAAAAAUAUUCCAAAUACUUUCCGCGGCUUCCUGGCUGCAAU
....(((((..((((....(((.....-----------.))).....----......(((((((....)))))))......)))).))))).........((((((....))))))... ( -22.80)
>DroEre_CAF1 66165 119 + 1
AUUAUCGGAAACACCAACUAAAAAUAAUCCGAAAACCUAUUAAAGAUAAAUAAUGUAAUGUCACUAAAGUGGCAUCUUAAAAAUAUUUCAAAUACUUUCCGCGGCUUUCUGGCUGCAAC
....(((((..................))))).....((((..(((((.....((..(((((((....)))))))..))....)))))..))))......((((((....))))))... ( -22.37)
>consensus
AUUAUUGGAUAUAUUAACAGAAAAUAU___________AUCCAACUG____CAUUUAAUGUCAAUAAAUUGACAUCUUAAAAAUAUUCCAAAUACUUUCCGCGGCUUUCUGGCUGCAAU
....(((((..........(((.................)))...............(((((((....)))))))...........))))).........((((((....))))))... (-15.27 = -15.21 +  -0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:57:57 2006