Locus 7915

Sequence ID 3R_DroMel_CAF1
Location 21,237,336 – 21,237,436
Length 100
Max. P 0.953779
window12747

overview

Window 7

Location 21,237,336 – 21,237,436
Length 100
Sequences 5
Columns 100
Reading direction forward
Mean pairwise identity 96.10
Mean single sequence MFE -22.11
Consensus MFE -19.32
Energy contribution -19.56
Covariance contribution 0.24
Combinations/Pair 1.04
Mean z-score -1.74
Structure conservation index 0.87
SVM decision value 1.44
SVM RNA-class probability 0.953779
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21237336 100 + 27905053
GUAUGUUUUCCUUUUCCCAGUUUUCCUUUGCUCCAUUUUAAACAGUUUGCUGACUAGCAUAAAUAUGUUUGCGGCAGACAUUUUCAGUAUGUGGAAAAUA
...((((((((.......(((........)))............((((((((...(((((....)))))..)))))))).............)))))))) ( -21.90)
>DroSec_CAF1 62104 100 + 1
GUAUGUUUUCCUUUUCCCACUUUUCCUUUGCUCCAUUUUAAACAGUUUGCUGACUAGCAUAAAUAUGUUUGCGGCAGACAUUUUCAGUGUGUGGAAAAUA
...((((((((....(.((((.....((((........))))..((((((((...(((((....)))))..))))))))......)))).).)))))))) ( -22.40)
>DroSim_CAF1 64347 100 + 1
GUAUGUUUUCCUUUUACCAGUUUUCCUUUGCUCCAUUUUAAACAGUUUGCUGACUAGCAUAAAUAUGUUUGUGGCAGACAUUUUCAGUUUGUAGAAAAUA
...(((((.........(((.......))).........)))))(((((((.((.(((((....))))).)))))))))((((((........)))))). ( -17.17)
>DroEre_CAF1 65907 100 + 1
GUAUGUUUUCCUUUUCCCAGUUUUCCUUUGCUCCAUUUUAAACAGUUUGCUGACUAGCAUUAAUAUGUUUGCGGCAGACAUUUGCAGUGUGUGGAAAAUA
...((((((((.......(((........))).((((.((((..((((((((...(((((....)))))..)))))))).)))).))))...)))))))) ( -23.50)
>DroYak_CAF1 71378 100 + 1
GUAUGUUUUCCUUUUCCCAGUUUUCCUUUGCUCCAUUUUAAGGAGUUUGCUGACUAGCAUAAAUAUGUUUGCGGCAGACAUUUUCAGUGUGUGGAAAAUA
...((((((((............(((((...........)))))((((((((...(((((....)))))..)))))))).............)))))))) ( -25.60)
>consensus
GUAUGUUUUCCUUUUCCCAGUUUUCCUUUGCUCCAUUUUAAACAGUUUGCUGACUAGCAUAAAUAUGUUUGCGGCAGACAUUUUCAGUGUGUGGAAAAUA
...((((((((.......(((........)))............((((((((...(((((....)))))..)))))))).............)))))))) (-19.32 = -19.56 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:57:56 2006