Locus 7914

Sequence ID 3R_DroMel_CAF1
Location 21,230,075 – 21,230,179
Length 104
Max. P 0.754343
window12746

overview

Window 6

Location 21,230,075 – 21,230,179
Length 104
Sequences 5
Columns 104
Reading direction reverse
Mean pairwise identity 97.69
Mean single sequence MFE -17.05
Consensus MFE -15.30
Energy contribution -15.50
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.42
Structure conservation index 0.90
SVM decision value 0.48
SVM RNA-class probability 0.754343
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21230075 104 - 27905053
UUUGUGGAACUAUCAUUAAACAAGUGAAGCCACCAGCAGAAACUGCGGGAAACUACUAUACAACAGCCACCACACAAGCAGCUCACCUCAAUCCACCACACGAA
..(((((.....(((((.....)))))(((.....((((...))))((....))..........................)))............))))).... ( -16.90)
>DroSec_CAF1 54744 104 - 1
UUUGUGGAACUAUCAUUAAACAAGUGAAGCCACCAGCAGAAACUGCGGGAAACUACUAUACACCAGCCACCACACAAGCAGCUCACCUCAAUCCACCACACGAA
..(((((.....(((((.....)))))(((.....((((...))))((....))..........................)))............))))).... ( -16.90)
>DroSim_CAF1 56965 104 - 1
UUUGUGGAACUAUCAUUAAACAAGUGAAGCCACCAGCAGAAACUGCGGGAAACUACUAUACACCAGCCACCACACAAGCAGCUCACCUCAAUCCACCACACGAA
..(((((.....(((((.....)))))(((.....((((...))))((....))..........................)))............))))).... ( -16.90)
>DroEre_CAF1 58298 104 - 1
UUUGUGGAACUAUCAUUAAACAAGUGAAGCCACCAGCAGAAACUGCGGAAAACUACUAUACACGAGCCACCACACAAGCAGCUCACCUCAAUCCACCACACGAA
..(((((.....(((((.....))))).....((.((((...))))))...............((((.............))))...........))))).... ( -18.02)
>DroYak_CAF1 59274 104 - 1
UUUGUGGAACUAUCAUUAAACAAGUGAAGCCACCAGCAAAAACUGCGGAAAACUACUAUGCACGAGCCACCACACAAGCAGCUCACCUCAAUCCACCACACGAA
..(((((.....(((((.....))))).....((.(((.....)))))...............((((.............))))...........))))).... ( -16.52)
>consensus
UUUGUGGAACUAUCAUUAAACAAGUGAAGCCACCAGCAGAAACUGCGGGAAACUACUAUACACCAGCCACCACACAAGCAGCUCACCUCAAUCCACCACACGAA
..(((((.....(((((.....)))))(((..((.((((...)))))).................((..........)).)))............))))).... (-15.30 = -15.50 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:57:55 2006