Locus 7913

Sequence ID 3R_DroMel_CAF1
Location 21,229,919 – 21,230,030
Length 111
Max. P 0.531619
window12745

overview

Window 5

Location 21,229,919 – 21,230,030
Length 111
Sequences 5
Columns 119
Reading direction reverse
Mean pairwise identity 69.16
Mean single sequence MFE -20.58
Consensus MFE -2.04
Energy contribution -2.68
Covariance contribution 0.64
Combinations/Pair 1.30
Mean z-score -1.83
Structure conservation index 0.10
SVM decision value -0.00
SVM RNA-class probability 0.531619
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21229919 111 - 27905053
AAGCAACAAAGGUGCCCAGACUGCAGUGAAACAAAAAGUAUAUCAAAAUAUUUAGUUUAAUGAUUACACAGCAGAGUGUGGCCAUCAAGGCGAAAAAGCGGCAGAAGCGCA--------
..((......((((((((..((((.(((.......((((((......))))))((((....)))).))).))))..)).)).))))...((......)).((....)))).-------- ( -22.80)
>DroSec_CAF1 54615 84 - 1
AAGCAACAAAGGAGCCCAGACUGCACUGAAAAAAAA---------AAAUAUUUAUCUUAAUGAUUACACAGCGA------------------ACAAAUCGGCGCAGGCCCA--------
..........((.(((.....(((.((((.......---------........(((.....)))..........------------------.....)))).)))))))).-------- ( -14.21)
>DroSim_CAF1 56827 93 - 1
AAGCAACAAAGGAGCCCAGACUGCACUGAAACAAAAACUAUUUCAAAAUGUUUGGCUUAAUGAUUACACAGCGA------------------ACAAAUUGGCGCAGGCCCA--------
..........((.((((((((.....(((((.........)))))....)))))................(((.------------------.........))).))))).-------- ( -15.20)
>DroEre_CAF1 58134 119 - 1
AAGCAACAAAGCAGCCCAGACUCCACUGAAACAAAAAUUAUUUCAUAAUGUUUAGCUUGCUGAUUACACAACUGAGUGUGGUCAUUAACGCAACAAAUCGGUUGAGACUCAACUAAGAA
..((.....((((((..((((.....(((((.........)))))....)))).)).))))((((((((......))))))))......))........(((((.....)))))..... ( -25.10)
>DroYak_CAF1 59110 119 - 1
AAGCAACAAAGGAGCACAGACUACACUGAAACAAAAAUUAUUUCAACAUGUUUAGUUUAAUGAUUACACAGCUAAGUGUGGCCAUUAAAACUACAACUAGGUUGAAACUCAACAAAUAA
...........(((..(((......)))............(((((((..(((((((((((((..(((((......)))))..)))).)))))).)))...))))))))))......... ( -25.60)
>consensus
AAGCAACAAAGGAGCCCAGACUGCACUGAAACAAAAAUUAUUUCAAAAUGUUUAGCUUAAUGAUUACACAGCGAAGUGUGG_CAU_AA__C_ACAAAUCGGCGGAGGCCCA________
...........((((((((......)))................................((......)).............................)))))............... ( -2.04 =  -2.68 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:57:54 2006