Locus 7911

Sequence ID 3R_DroMel_CAF1
Location 21,228,235 – 21,228,354
Length 119
Max. P 0.739169
window12742

overview

Window 2

Location 21,228,235 – 21,228,354
Length 119
Sequences 5
Columns 119
Reading direction reverse
Mean pairwise identity 82.77
Mean single sequence MFE -27.78
Consensus MFE -13.76
Energy contribution -14.84
Covariance contribution 1.08
Combinations/Pair 1.27
Mean z-score -2.53
Structure conservation index 0.50
SVM decision value 0.44
SVM RNA-class probability 0.739169
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21228235 119 - 27905053
UAAGAGUUUCACUUUUUCAUCCCCCGGAAUUCAUUGCUGCAAUUCCAAUAAGGGUCUCGAGAAAAUGUAAAUAACACUUUUACAUCUUAAGUAAGUUUUGCGGAAACAGAUGACUCUUA
((((((((...((.((((..(((..((((((((....)).)))))).....))).((..(((...((((((.......)))))))))..))...........)))).))..)))))))) ( -25.00)
>DroSec_CAF1 52962 119 - 1
UAAGAGUUUCACUUUUUCAUCCCCCGGAAUUCAUUGUUGCAAUUCCAAUAAGGCACUCGAGAAAAUGGAAAUAACUCUUUUACAUCUUAAGUAAGCUUAACGGAAACAGAUGACUCUUA
((((((((...((.((((.......((((((((....)).))))))....(((((((..(((....(((......)))......)))..)))..))))....)))).))..)))))))) ( -26.00)
>DroSim_CAF1 55125 119 - 1
UAAGAGUUUCACUUUUUCAUCCCCCGGAAUUCAUUGUUGCAAUUCCAAUAAGGGACUAGAAAAAAUGGAAAUAACUCUUUUACAUCUUAAGUAAGUUUAACGGAAACAGAUGACUCUUA
(((((((((((.((((((.((((..((((((((....)).)))))).....))))...)))))).)))).............(((((...((.......))(....))))))))))))) ( -27.40)
>DroEre_CAF1 56425 105 - 1
UAAGAGUUCCACUUUUUCAUCUCCCCGAAUUCAUUGUUGUAAUUUCAAUAAGAGUUUGGUGGAAAUGGAAAUAACGCCUUCACAUCAUAUGUGAGUUUUACGGAA--------------
......((((...(((((((.(((((((((((.((((((......)))))))))))))).))).))))))).......(((((((...)))))))......))))-------------- ( -31.80)
>DroYak_CAF1 57399 119 - 1
UAAGAGCUUCAAUUUUUCAUCCCCCGGAAUUCAUUGUUGCAAUUCCAAUAAGAGUUUCGUGAAAAUGAAAAUAACGCUCUCACAUCUUAAGUGAGUUUGACGGAACGAGGUGACUUUCA
.(((.(((((...(((((((...(((((((((.((((((......)))))))))))))).)...)))))))...(((.(((((.......)))))...).))....)))))..)))... ( -28.70)
>consensus
UAAGAGUUUCACUUUUUCAUCCCCCGGAAUUCAUUGUUGCAAUUCCAAUAAGGGUCUCGAGAAAAUGGAAAUAACGCUUUUACAUCUUAAGUAAGUUUAACGGAAACAGAUGACUCUUA
(((((((((((.((((((..(((..((((((((....)).)))))).....)))....)))))).)))))........(((((.......)))))..................)))))) (-13.76 = -14.84 +   1.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:57:51 2006