| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 21,226,141 – 21,226,301 |
| Length | 160 |
| Max. P | 0.949618 |
| Location | 21,226,141 – 21,226,261 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 97.50 |
| Mean single sequence MFE | -46.87 |
| Consensus MFE | -43.83 |
| Energy contribution | -44.50 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.63 |
| Structure conservation index | 0.94 |
| SVM decision value | 1.39 |
| SVM RNA-class probability | 0.949618 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 21226141 120 + 27905053 CUGGAGCAACUGCCGGGUACCAGAGCACGAAUUCCGUUGGCCUUGUUGCGACACAGAAGGUCGGAAACGCUGGCACCACUGGAGGUGCUUGCAAAAACUGCAAUAAGCAGCAGGGCAAAA ..((((....((((.(....).).)))....))))....(((((((((((((.......)))(....)((.((((((......)))))).))..............)))))))))).... ( -42.30) >DroEre_CAF1 54315 120 + 1 CUGGAGCAACUGCCGGGUACCAGAGCCCGAAUACCGUUGGCCUUGUUGCGACACAGAAGGUCGGAAACGCUGGCACCGCUGGUGGUGCUUGCAAAAACUGCAAUAAGCAGCAGGGCAAAA ..((.((....))(((((......)))))....))....(((((((((((((.......)))(....)((.(((((((....))))))).))..............)))))))))).... ( -47.90) >DroYak_CAF1 55278 120 + 1 CUGGAGCAACUGCCGGGUACCAGAGCCCGAAUGCCGUUGGCCUUGUUGCGACACAGAAGGUCGGAAACGCUGGCACCGCUGGUGGUGCUUGCAAAAACUGCAAUAAGCAGCAGGGCAAAA ......((((.(((((((......)))))...)).))))(((((((((((((.......)))(....)((.(((((((....))))))).))..............)))))))))).... ( -50.40) >consensus CUGGAGCAACUGCCGGGUACCAGAGCCCGAAUACCGUUGGCCUUGUUGCGACACAGAAGGUCGGAAACGCUGGCACCGCUGGUGGUGCUUGCAAAAACUGCAAUAAGCAGCAGGGCAAAA ..((.((....))(((((......)))))....))....(((((((((((((.......)))(....)((.(((((((....))))))).))..............)))))))))).... (-43.83 = -44.50 + 0.67)
| Location | 21,226,181 – 21,226,301 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 93.87 |
| Mean single sequence MFE | -38.87 |
| Consensus MFE | -32.88 |
| Energy contribution | -33.66 |
| Covariance contribution | 0.78 |
| Combinations/Pair | 1.03 |
| Mean z-score | -2.59 |
| Structure conservation index | 0.85 |
| SVM decision value | 0.74 |
| SVM RNA-class probability | 0.837906 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 21226181 120 + 27905053 CCUUGUUGCGACACAGAAGGUCGGAAACGCUGGCACCACUGGAGGUGCUUGCAAAAACUGCAAUAAGCAGCAGGGCAAAAGCUGUGGAAGCAAAAAAAAGGGUGCUUUACAGAACCAUUU ((((.((((..(((((...((((....)(((((((((......)))))(((((.....)))))....))))..))).....)))))...))))....))))................... ( -40.10) >DroEre_CAF1 54355 119 + 1 CCUUGUUGCGACACAGAAGGUCGGAAACGCUGGCACCGCUGGUGGUGCUUGCAAAAACUGCAAUAAGCAGCAGGGCAAAAGCUGCGGAAACAA-AAAAAGGAUGCUUUACGGAACCAUCU ..((((((((((.......)))(....)((.(((((((....))))))).)).......)))))))(((((.........)))))(....)..-.....(((((.(((...))).))))) ( -37.60) >DroYak_CAF1 55318 119 + 1 CCUUGUUGCGACACAGAAGGUCGGAAACGCUGGCACCGCUGGUGGUGCUUGCAAAAACUGCAAUAAGCAGCAGGGCAAAAGCUGUGGAACCAA-AAAAGGGCUGCAUUACAGAACCAUUU ..((((((((((.......)))(....)((.(((((((....))))))).)).......)))))))((((((.(((....))).)....((..-....)))))))............... ( -38.90) >consensus CCUUGUUGCGACACAGAAGGUCGGAAACGCUGGCACCGCUGGUGGUGCUUGCAAAAACUGCAAUAAGCAGCAGGGCAAAAGCUGUGGAAACAA_AAAAAGGAUGCUUUACAGAACCAUUU ((((((((((((.......)))(....)((.(((((((....))))))).))..............)))))))))......(((((((.................)))))))........ (-32.88 = -33.66 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:57:48 2006