Locus 7908

Sequence ID 3R_DroMel_CAF1
Location 21,221,802 – 21,221,909
Length 107
Max. P 0.522404
window12737

overview

Window 7

Location 21,221,802 – 21,221,909
Length 107
Sequences 6
Columns 119
Reading direction reverse
Mean pairwise identity 80.46
Mean single sequence MFE -34.55
Consensus MFE -17.42
Energy contribution -18.62
Covariance contribution 1.19
Combinations/Pair 1.09
Mean z-score -2.14
Structure conservation index 0.50
SVM decision value -0.02
SVM RNA-class probability 0.522404
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21221802 107 - 27905053
UGACUGUCAAGUAAUCCUGGCAAUGGGAAUGGCCAGCACAAAUGGAGCUCAAAUCGCCUUGUAAUGGCAUCG---UUUGCGAUAAAACAAGGCA--GUU-------GGUGGAUAGAUGU
...(((((......((((......))))...((((((.......((.......))(((((((.((.(((...---..))).))...))))))).--)))-------))).))))).... ( -32.50)
>DroPse_CAF1 59253 113 - 1
UGACUGUCAAGUUAUCCUGGCAACGGGAAUGGCUAGCACAAAUGGAGCUCAAAUCGCCUUGUAAUGGCAUCG---UUUGCGAUAAAACAAGGCA--CCCACCAAGAGGUGGG-AGCCAG
(((((....)))))(((((....))))).((((((((.(.....).)))......(((((((.((.(((...---..))).))...))))))).--((((((....))))))-))))). ( -46.10)
>DroEre_CAF1 49973 107 - 1
UGACUGUCAAGUAAUCCUGGCAAUGGGAAUGGCCUGCACAAAUGGAGCUCAAAUCGCCUUGUAAUGGCAUCG---UUUGCGAUAAAACAAGGCA--GUU-------GGUGGAUAGCUGU
...(((((......((((......))))...(((.((.......((.......))(((((((.((.(((...---..))).))...))))))).--)).-------))).))))).... ( -28.00)
>DroWil_CAF1 51259 111 - 1
UGACUGUCAAGUUAUCUGGGCAUUGGGAAUGGUUAAGCAAAAUGGAGCUCAAAUCGCCAUGUAAUGGCAUCGCUGUUUGCGAUAAGACAACGCGCGGUA-------GGUAG-UAAAUGU
(((((....))))).(((.((.(((.....((((.(((........)))..))))(((((...)))))(((((.....)))))....))).)).)))..-------.....-....... ( -25.70)
>DroAna_CAF1 46740 95 - 1
UGACUGUCAAGUUAUCCUUGCGAUGGAAAUGGCCAGCACAAAUGGAGCUCAAAUCGCCCCGUAAUGGCAUCG---UUUGCGAUAAAACAAGGCA--GUC-------------------C
.(((((((...((((((..(((((((......)).((....((((.((.......)).))))....))))))---)..).))))).....))))--)))-------------------. ( -28.90)
>DroPer_CAF1 58124 113 - 1
UGACUGUCAAGUUAUCCUGGCAACGGGAAUGGCUAGCACAAAUGGAGCUCAAAUCGCCUUGUAAUGGCAUCG---UUUGCGAUAAAACAAGGCA--CCCACCAAGAGGUGGG-AGCCAG
(((((....)))))(((((....))))).((((((((.(.....).)))......(((((((.((.(((...---..))).))...))))))).--((((((....))))))-))))). ( -46.10)
>consensus
UGACUGUCAAGUUAUCCUGGCAAUGGGAAUGGCCAGCACAAAUGGAGCUCAAAUCGCCUUGUAAUGGCAUCG___UUUGCGAUAAAACAAGGCA__GUC_______GGUGG__AGCUGU
(((((....)))))(((((....)))))...........................(((((((.((.(((........))).))...))))))).......................... (-17.42 = -18.62 +   1.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:57:46 2006