Locus 7907

Sequence ID 3R_DroMel_CAF1
Location 21,221,690 – 21,221,790
Length 100
Max. P 0.898625
window12736

overview

Window 6

Location 21,221,690 – 21,221,790
Length 100
Sequences 5
Columns 100
Reading direction reverse
Mean pairwise identity 83.50
Mean single sequence MFE -26.46
Consensus MFE -15.42
Energy contribution -17.54
Covariance contribution 2.12
Combinations/Pair 1.08
Mean z-score -2.73
Structure conservation index 0.58
SVM decision value 1.00
SVM RNA-class probability 0.898625
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21221690 100 - 27905053
AUAAGUGCCUCUAAGUAUGGAUUUACAGUUGCUUGCUAUAAACUGCACAGGCAGAAAUCAUUCUCCCUAUUGUCGGCGUCUCAUAAAUCACUAUGGCACA
....(((((....(((...((((((.((.(((((((........))).(((.((((....)))).)))......)))).))..)))))))))..))))). ( -23.60)
>DroSec_CAF1 48147 100 - 1
AUAAGUGCCUCUAAGUAUGGAUUUACAGUUGCUUGCUGUAAACUGCACAGGCAAAAAUCAUUCUUUAUAUUUAGGGCGUCUUAUAAAUCAUUAUGACACA
(((((((((.(((((((((((((((((((.....)))))))).(((....)))..........))))))))))))))).)))))................ ( -28.20)
>DroSim_CAF1 50531 100 - 1
AUAAGUGCCUCUAAGUAUGGAUUUACAGUUGCUUGCUGUAAACUGCACUGGCAGAAAUCAUAUUUCCUAUUUAGGGCGUCUCAUAAAUCACUAUGGCACA
......(((.(((((((.(((((((((((.....))))))))((((....))))..........)))))))))))))((.(((((......))))).)). ( -31.30)
>DroEre_CAF1 49861 100 - 1
AUAAGUGCCUCUAAGUAUGGAUUUACAGUUGCUUGCUGUAAACUGCACACGCAGAAAUCAUUUGCCUUUUUUAGGGCGGCACAUAAAUCAAUUUGGCUCC
....(((((.......((((.((((((((.....))))))))((((....))))...))))..(((((....)))))))))).................. ( -29.20)
>DroYak_CAF1 50498 89 - 1
AUAAGUGCCUCUAAGUAUGGAUUUACAGUUGCUUGCUGUAAACUGCACAGGCAGAAAUCAUUUUUUUUUUAUCG----------AAAUGAAGGUGUCAC-
....((((.((((....))))((((((((.....))))))))..)))).((((....(((((((.........)----------))))))...))))..- ( -20.00)
>consensus
AUAAGUGCCUCUAAGUAUGGAUUUACAGUUGCUUGCUGUAAACUGCACAGGCAGAAAUCAUUUUUCCUAUUUAGGGCGUCUCAUAAAUCAAUAUGGCACA
......(((.(((((((.(((((((((((.....))))))))((((....)))).........))).))))))))))....................... (-15.42 = -17.54 +   2.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:57:45 2006