Locus 7906

Sequence ID 3R_DroMel_CAF1
Location 21,216,850 – 21,216,947
Length 97
Max. P 0.623507
window12735

overview

Window 5

Location 21,216,850 – 21,216,947
Length 97
Sequences 5
Columns 98
Reading direction reverse
Mean pairwise identity 96.08
Mean single sequence MFE -18.66
Consensus MFE -14.12
Energy contribution -14.12
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -2.26
Structure conservation index 0.76
SVM decision value 0.18
SVM RNA-class probability 0.623507
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21216850 97 - 27905053
CAUAAAUAUUAUAGAUAUCCUCUCCAUCAAAAGUUCAAUCAUCUGCUCCAUCAUCAAGUU-UGAAGGGAGCACUUCACUUGACUGAGCUGAACUGACC
..........................(((..((((((.(((..((((((.(((.......-)))..)))))).......))).))))))....))).. ( -19.00)
>DroSec_CAF1 43413 97 - 1
CAUAAAUAUUAUAGAUAUCCUCUCCAUCAAAAGUUCAAUCAUCUGCUCCAUCAUCAAGUU-UGAAGGGAGCACUUCACUUGACUGAGCUGAACUGACC
..........................(((..((((((.(((..((((((.(((.......-)))..)))))).......))).))))))....))).. ( -19.00)
>DroSim_CAF1 45774 97 - 1
CAUAAAUAUUAUAGAUAUCCUCUCCAUCAAAAGUUCAAUCAUCUGCUCCAUCAUCAAGUU-UGAAGGGAGCACUUCACUUGACUGAGCUGAACUGACC
..........................(((..((((((.(((..((((((.(((.......-)))..)))))).......))).))))))....))).. ( -19.00)
>DroEre_CAF1 45042 92 - 1
CAUAAAUAUUAUAGAUAUCCUCUCCAUCAAAAGUUCAAUCAUCUGCUCCAUCAUCAAGUU-UGAAGGGAGCACUUCACUUGACU-----GAACUGACC
...............................((((((.(((..((((((.(((.......-)))..)))))).......))).)-----))))).... ( -18.00)
>DroYak_CAF1 45636 93 - 1
CAUAAAUAUUAUAGAUCUCCUCUCCAUCAAAAGUUCAAUCAUCUGCUCCAUCAUCAAGUUUUGAAGGGAGCACUUCACUUGACU-----GAACUGACC
...............................((((((.(((..((((((.(((........)))..)))))).......))).)-----))))).... ( -18.30)
>consensus
CAUAAAUAUUAUAGAUAUCCUCUCCAUCAAAAGUUCAAUCAUCUGCUCCAUCAUCAAGUU_UGAAGGGAGCACUUCACUUGACUGAGCUGAACUGACC
...............................(((((.......((((((.(((........)))..))))))..((....)).......))))).... (-14.12 = -14.12 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:57:44 2006