Locus 7904

Sequence ID 3R_DroMel_CAF1
Location 21,213,105 – 21,213,204
Length 99
Max. P 0.514999
window12730

overview

Window 0

Location 21,213,105 – 21,213,204
Length 99
Sequences 6
Columns 103
Reading direction forward
Mean pairwise identity 83.19
Mean single sequence MFE -33.25
Consensus MFE -21.41
Energy contribution -22.55
Covariance contribution 1.14
Combinations/Pair 1.16
Mean z-score -1.93
Structure conservation index 0.64
SVM decision value -0.04
SVM RNA-class probability 0.514999
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21213105 99 + 27905053
UGGACUUGGCCUUAUCUGUGGCCAUGUCCUGUUUGCUAUUCC-CC---CGACUUAGAGCCAGGUAUACAGGCAGGUGUGGUUUUGUCUCGGCACGAUUCUACU
.((((.(((((........))))).)))).............-.(---(((..((((((((....(((......)))))))))))..))))............ ( -29.90)
>DroSec_CAF1 39801 99 + 1
UGGACUUGGCCUUAUCUGUGGCCAUGUCCUGUUUGCUAUUCC-CA---CGACUCAGAGCCAGGUACAAAGCCAGGUGUGGGUUUGUCUCGGCACGAUUCUAUU
.((((.(((((........))))).)))).............-..---.((.((.(.(((..(.(((((.(((....))).))))))..))).))).)).... ( -32.80)
>DroSim_CAF1 41684 99 + 1
UGGACUUUGCCUUAUCUGUGGCCAUGUCCUGUUUGCUAUUCC-CC---CGACUCAGAGCCAGGUACAAAGCCAGGUGUGGUUUUGUCUCGGCACGAUUCUAUU
.((((...(((........)))...)))).............-..---.((.((.(.(((..(.(((((((((....))))))))))..))).))).)).... ( -29.30)
>DroEre_CAF1 41262 98 + 1
UAGACUUGGCCUUAUCUGUGGCCAUGUCCUGUUUGCCAUUUC--C---CCACUCAGAAGAGGGUACAAAGCCAGGUGUGGUUUUGUCUCGGCACGAUUCUAUU
..(((.(((((........))))).))).....((((.((((--.---.......)))).(((.(((((((((....)))))))))))))))).......... ( -32.60)
>DroYak_CAF1 41775 100 + 1
UGGACUUGGCCUUAUCUGUGGCCAUGUCCUGCCUGCCAUUUCACC---CGACUCAGACUUGGGUACAAAGCCAGGUGUGGUUUUGUCUCGGCACGAUUCUAUU
.((((.(((((........))))).))))..(.((((.....(((---(((.......))))))(((((((((....)))))))))...)))).)........ ( -38.20)
>DroAna_CAF1 38959 99 + 1
--GACAUGGUCUUAUCUCUGGCCACGUCCUGUUUGCUGUCCC-CCCCUCCACUUGUGGGCUGGGCUAAGCUCAGGUGUGGU-UUGUCUGGGCCGGAUUCAAUU
--((..((((((...(...(((((((.((((...(((....(-((..((((....))))..)))...))).))))))))))-).)...))))))...)).... ( -36.70)
>consensus
UGGACUUGGCCUUAUCUGUGGCCAUGUCCUGUUUGCUAUUCC_CC___CGACUCAGAGCCAGGUACAAAGCCAGGUGUGGUUUUGUCUCGGCACGAUUCUAUU
.((((.(((((........))))).))))....((((.............(((........)))(((((((((....)))))))))...)))).......... (-21.41 = -22.55 +   1.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:57:40 2006