Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,707,599 – 2,707,724 |
Length | 125 |
Max. P | 0.765523 |
Location | 2,707,599 – 2,707,702 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 85.59 |
Mean single sequence MFE | -29.26 |
Consensus MFE | -21.54 |
Energy contribution | -21.98 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.12 |
Mean z-score | -1.68 |
Structure conservation index | 0.74 |
SVM decision value | 0.17 |
SVM RNA-class probability | 0.617650 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2707599 103 - 27905053 --CACCAUGAUGCC-AUGCCAAUGGCCGCCAUACGCACCACUGUGAGUGCGUGAGUAUCCGCAGAAGCCGUGUGCACCGAAAAAAAAUAUAUCGUAAGCAUGAAUA--------- --...((((..(((-((....))))).((.(((((.....(((((..(((....)))..)))))....))))))).......................))))....--------- ( -29.50) >DroSec_CAF1 17984 113 - 1 ACCACCAUGAUGCC-AUGCCAAUGGCCGCCAUACGCACCAUUGUGAGUGCGUGAGUAUCCGCAGAAGCCGUGUGCACAGAAAAC-AAUUUUUCUAAAUCAUGAAUAUUUAAAUUA .....(((((((((-((....))))).((.(((((.....(((((..(((....)))..)))))....)))))))..((((((.-...))))))..))))))............. ( -31.90) >DroSim_CAF1 19063 113 - 1 ACCACCAUGAUGCC-AUGCCAAUGGCCGCCAUACGCACCAUUGUGAGUGCGUGAGUAUCCGCAGAAGCCGUGUGCACCGAAAAC-AAUUUUUCUAAAUCAUGAAUAUUUAAAUUA .....(((((((((-((....))))).((.(((((.....(((((..(((....)))..)))))....)))))))...(((((.-...)))))...))))))............. ( -30.80) >DroEre_CAF1 18863 107 - 1 --CACCAUGAUGCCCAUGCCAAUGGCCGCCAUACGCACAAUUGUGAGUGCGUGAGUAUCCGCAGAAGCCGUGUGCACCGGAAAA-AAUAUUUCGAAGGCAUGACUAUUUA----- --......((((..((((((.((((...))))..(((((.(((((..(((....)))..)))))......)))))..(((((..-....)))))..))))))..))))..----- ( -31.40) >DroYak_CAF1 18731 109 - 1 ACCACCAUGAUGCCAAUGCCAAUGGCCGCCAUACGCACAAUUGUGUGUGCGUGAGUAUCUGCAGAAGCCGUGACACCGGGAAAA-AAUAUUUCGAAAACAUAAAUAUUUA----- .....((((..((...(((.....(((((((((((((....)))))))).))).))....)))...))))))....((..(...-....)..))................----- ( -22.70) >consensus ACCACCAUGAUGCC_AUGCCAAUGGCCGCCAUACGCACCAUUGUGAGUGCGUGAGUAUCCGCAGAAGCCGUGUGCACCGAAAAA_AAUAUUUCGAAAGCAUGAAUAUUUA_____ .....((((.......(((..(((((.((.....))....(((((..(((....)))..)))))..)))))..)))..((((.......)))).....))))............. (-21.54 = -21.98 + 0.44)
Location | 2,707,630 – 2,707,724 |
---|---|
Length | 94 |
Sequences | 4 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 88.75 |
Mean single sequence MFE | -43.60 |
Consensus MFE | -32.96 |
Energy contribution | -33.40 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.03 |
Mean z-score | -1.86 |
Structure conservation index | 0.76 |
SVM decision value | 0.51 |
SVM RNA-class probability | 0.765523 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2707630 94 + 27905053 GCACACGGCUUCUGCGGAUACUCACGCACUCACAGUGGUGCGUAUGGCGGCCAUUGGCAU-GGCAUCAUGGUG-----------GUGCCAUGAUGGUGGUGC---CGUU ....(((((...(((.(.(((.(((.(((.....)))))).)))).)))((((((..(((-((((((.....)-----------))))))))..))))))))---))). ( -41.90) >DroSec_CAF1 18023 105 + 1 GCACACGGCUUCUGCGGAUACUCACGCACUCACAAUGGUGCGUAUGGCGGCCAUUGGCAU-GGCAUCAUGGUGGUGCUCCGGUGGUGCCAUGGUGGUGGUGC---CGUU .....(.((....)).)......(((((((......)))))))((((((.((((((.(((-((((((((..(((....)))))))))))))).)))))))))---))). ( -47.00) >DroSim_CAF1 19102 108 + 1 GCACACGGCUUCUGCGGAUACUCACGCACUCACAAUGGUGCGUAUGGCGGCCAUUGGCAU-GGCAUCAUGGUGGUGCUCCGGUGGUGCCAUGGUGGUGGUGCCGCCGUU ....(((((..............(((((((......)))))))..((((.((((((.(((-((((((((..(((....)))))))))))))).))))))))))))))). ( -51.40) >DroEre_CAF1 18897 95 + 1 GCACACGGCUUCUGCGGAUACUCACGCACUCACAAUUGUGCGUAUGGCGGCCAUUGGCAUGGGCAUCAUGGUG-----------GUGGCAUGGUGGUGGUGC---UGUU ((((((.(((..(((.....(..((((((........))))))..)((.(((((..((....))...))))).-----------)).))).))).)).))))---.... ( -34.10) >consensus GCACACGGCUUCUGCGGAUACUCACGCACUCACAAUGGUGCGUAUGGCGGCCAUUGGCAU_GGCAUCAUGGUG___________GUGCCAUGGUGGUGGUGC___CGUU ((((((.(((...((.(...(..((((((........))))))..).).))....))).....((((((((((.(((....))).)))))))))))).))))....... (-32.96 = -33.40 + 0.44)
Location | 2,707,630 – 2,707,724 |
---|---|
Length | 94 |
Sequences | 4 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 88.75 |
Mean single sequence MFE | -34.71 |
Consensus MFE | -25.75 |
Energy contribution | -25.82 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.04 |
Mean z-score | -1.74 |
Structure conservation index | 0.74 |
SVM decision value | 0.31 |
SVM RNA-class probability | 0.684665 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2707630 94 - 27905053 AACG---GCACCACCAUCAUGGCAC-----------CACCAUGAUGCC-AUGCCAAUGGCCGCCAUACGCACCACUGUGAGUGCGUGAGUAUCCGCAGAAGCCGUGUGC ...(---((......(((((((...-----------..)))))))(((-((....))))).)))...(((((..(((((..(((....)))..))))).....))))). ( -37.90) >DroSec_CAF1 18023 105 - 1 AACG---GCACCACCACCAUGGCACCACCGGAGCACCACCAUGAUGCC-AUGCCAAUGGCCGCCAUACGCACCAUUGUGAGUGCGUGAGUAUCCGCAGAAGCCGUGUGC ...(---((.(((....(((((((.((..((.......)).)).))))-)))....)))..)))...(((((..(((((..(((....)))..))))).....))))). ( -35.50) >DroSim_CAF1 19102 108 - 1 AACGGCGGCACCACCACCAUGGCACCACCGGAGCACCACCAUGAUGCC-AUGCCAAUGGCCGCCAUACGCACCAUUGUGAGUGCGUGAGUAUCCGCAGAAGCCGUGUGC ...((((((........(((((((.((..((.......)).)).))))-)))......))))))...(((((..(((((..(((....)))..))))).....))))). ( -41.14) >DroEre_CAF1 18897 95 - 1 AACA---GCACCACCACCAUGCCAC-----------CACCAUGAUGCCCAUGCCAAUGGCCGCCAUACGCACAAUUGUGAGUGCGUGAGUAUCCGCAGAAGCCGUGUGC ....---.............((((.-----------...((((.....))))....))))...((((((.....(((((..(((....)))..)))))....)))))). ( -24.30) >consensus AACG___GCACCACCACCAUGGCAC___________CACCAUGAUGCC_AUGCCAAUGGCCGCCAUACGCACCAUUGUGAGUGCGUGAGUAUCCGCAGAAGCCGUGUGC .......((((...((.(((((................))))).)).........(((((.((.....))....(((((..(((....)))..)))))..))))))))) (-25.75 = -25.82 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:12 2006