Locus 79

Sequence ID 3R_DroMel_CAF1
Location 503,175 – 503,269
Length 94
Max. P 0.616930
window136

overview

Window 6

Location 503,175 – 503,269
Length 94
Sequences 5
Columns 117
Reading direction forward
Mean pairwise identity 74.86
Mean single sequence MFE -28.40
Consensus MFE -7.50
Energy contribution -7.22
Covariance contribution -0.28
Combinations/Pair 1.21
Mean z-score -1.70
Structure conservation index 0.26
SVM decision value 0.17
SVM RNA-class probability 0.616930
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 503175 94 + 27905053
AACAAGGUUUGUUAUGGUGACACUG---GCCGU------AUUUGUCUAUUAGCCGAUAGGGCCA-----CA----CUCGUGUCUA-UCAAA--ACAGAACUCUAUGGCUU--GGCUG
..((((.((((((.(((((((((((---(((.(------(((.((......)).)))).)))))-----..----...))))).)-))).)--))))).(.....).)))--).... ( -28.60)
>DroSec_CAF1 31313 96 + 1
AACAAGGUUUGUUAUGGUGACACUG---GCCAU------AUUUGUCUAUUAGCCGAUAGGGCCA-----CA----CUCGUGUCUA-UCAAA--ACAGAACUCUAUGGCUUCUAGCUG
....((.((((((.(((((((((((---(((.(------(((.((......)).)))).)))))-----..----...))))).)-))).)--))))).))....(((.....))). ( -26.90)
>DroSim_CAF1 31345 96 + 1
AACAAGGUUUGUUAUGGUGACACUG---GCCAU------AUUUGUCUAUUAGCCGAUAGGGCCA-----CA----CUCGUGUCUA-UCAAA--ACAGAACUCUAUGGCUUCUAGCUG
....((.((((((.(((((((((((---(((.(------(((.((......)).)))).)))))-----..----...))))).)-))).)--))))).))....(((.....))). ( -26.90)
>DroYak_CAF1 50954 95 + 1
AACACGGUUUACUAUGGUGACACUG---ACCAUAUAUGUAUUUGCCUAUUAGCUGAUAGGGCCA-----CA----CUCGAGUCUGAGCCACACUCAGAACUG----------AGCUG
.....(((....((((((.......---))))))..........((((((....))))))))).-----((----((((..((((((.....))))))..))----------)).)) ( -25.80)
>DroAna_CAF1 33184 108 + 1
AACAUGGCUUAUUAUGGUGACACUCUGCGGCAU------UUCUGGCUAUUAGCUGAUAGGGCCCAGCCAGACCAGCCAGUGUCAA-UCAAG--CCAGAACUAUAUGGCUUUACGAGG
.......(((....((((((((((....(((..------.(((((((....(((.....)))..)))))))...))))))))).)-)))((--(((........)))))....))). ( -33.80)
>consensus
AACAAGGUUUGUUAUGGUGACACUG___GCCAU______AUUUGUCUAUUAGCCGAUAGGGCCA_____CA____CUCGUGUCUA_UCAAA__ACAGAACUCUAUGGCUU__AGCUG
.....((((....(((((..........)))))............(((((....)))))))))...................................................... ( -7.50 =  -7.22 +  -0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:30 2006