Locus 7898

Sequence ID 3R_DroMel_CAF1
Location 21,168,785 – 21,168,903
Length 118
Max. P 0.772797
window12717

overview

Window 7

Location 21,168,785 – 21,168,903
Length 118
Sequences 5
Columns 118
Reading direction forward
Mean pairwise identity 84.41
Mean single sequence MFE -31.10
Consensus MFE -18.74
Energy contribution -19.78
Covariance contribution 1.04
Combinations/Pair 1.13
Mean z-score -2.45
Structure conservation index 0.60
SVM decision value 0.53
SVM RNA-class probability 0.772797
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21168785 118 + 27905053
UAUAUCUCUAUUUCGGAAGGCAAUUCAAAACCUGCUGAAAUUGUUUACACAGAAACAGAACAGCGGGUCACUUUUGUCAAUCCCAAACGAGAUCGUGAAAAGAAAAAAUUGAGCUCUU
......(((.(((((((.(((((......((((((((...((((((......))))))..)))))))).....)))))..)))...(((....))))))))))............... ( -27.20)
>DroSec_CAF1 2723 118 + 1
UAUAUUUCUCUGUCGGAAGGCAAUUUAAGACCUGCUGAAAUUGUUUACACAGAAACAGAACAGCGGGUCACUCUUGUCAAUCCCAAACGAGAUCGUGAAAAGAAAAAAAUGAGCUCUU
....(((((.((((....)))).((((.(((((((((...((((((......))))))..)))))))))..((((((.........))))))...)))).)))))............. ( -31.20)
>DroSim_CAF1 2719 118 + 1
UAUAUCUCUCUGUCGGAAGGCAAUUUAAGACCUGCUGAAAUUGUUUACACAGAAACAGAACAGCGGGUCACUCUUGUCAAUCCCAAACGAGAUCGUGAAAAGAAAAAAAUGAGCUCUU
.......(((((((....))))......(((((((((...((((((......))))))..)))))))))..((((.((((((.(....).)))..))).)))).......)))..... ( -31.00)
>DroEre_CAF1 2632 118 + 1
UAUAUCUCUCUGUCGGAAGGCCAUCCAGGAUCAGCUGAAUUUGUUUACACAGAAACAGAACAGCGGGUGACUGUUGUUCAUCCCAAACGGGAUUGUGAUAGGCAAAAACUGAGAGCGU
.....(((((.(((....)))....(((......)))..(((((((((((((.....(((((((((....))))))))).((((....))))))))).))))))))....)))))... ( -43.70)
>DroYak_CAF1 2663 112 + 1
UUUAUCUCUCUGUCGGAAGGCAAUUCAUUACCAGCAGAAAUGGUUUACACAGAAUCAGAACAGCGGGUCACUUUUGCCCAUACAAAAAGGGA------AAAGCAAAAAGUAAGAGCUU
.....((((.((((....)))).......(((.((.....((((((.....)))))).....)).)))..(((((.(((.........))))------)))).........))))... ( -22.40)
>consensus
UAUAUCUCUCUGUCGGAAGGCAAUUCAAGACCUGCUGAAAUUGUUUACACAGAAACAGAACAGCGGGUCACUCUUGUCAAUCCCAAACGAGAUCGUGAAAAGAAAAAAAUGAGCUCUU
...(((((..((((....)))).......((((((((...((((((......))))))..))))))))....................)))))......................... (-18.74 = -19.78 +   1.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:57:28 2006