Locus 7897

Sequence ID 3R_DroMel_CAF1
Location 21,168,600 – 21,168,692
Length 92
Max. P 0.716742
window12716

overview

Window 6

Location 21,168,600 – 21,168,692
Length 92
Sequences 5
Columns 101
Reading direction reverse
Mean pairwise identity 72.71
Mean single sequence MFE -20.07
Consensus MFE -2.96
Energy contribution -3.96
Covariance contribution 1.00
Combinations/Pair 1.27
Mean z-score -1.64
Structure conservation index 0.15
SVM decision value 0.39
SVM RNA-class probability 0.716742
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21168600 92 - 27905053
CUCAUAAGAGGUUUCAUAAUCGAUUCUUUUGACCUUAUCCUCUUCGGGUUUUUUA---------ACUUUCCUUUUUGUUGGCUUGGAAGUUUUUGCCUGAC
......(((((........((((.....))))......)))))((((((.....(---------((((.((.............)))))))...)))))). ( -18.36)
>DroSim_CAF1 2537 89 - 1
CCCAUAAGAGGUUUCAUGAUCGAUUCUUUUGACCUUAUCCUCUUCGGGUUUUUUA---------AGUUUCCUUUU---UGGCUUGGAAGCUUUUGCCUGAC
......(((((......(.((((.....)))).)....)))))((((((.....(---------(((((((....---......))))))))..)))))). ( -23.60)
>DroEre_CAF1 2450 89 - 1
CUCAUAAGAGCUUUCAAGAUCGAUUCUCUUGACCUUGUCCUCUUCGGAUUUUCCA---------AGUUUCUUUUU---CGGCUUGGCAGCUUUGGCCUGAC
.(((..((((((.(((((.((((....((((.....((((.....))))....))---------))........)---)))))))).))))))....))). ( -21.80)
>DroYak_CAF1 2481 89 - 1
CUCAAAAGAGCUUUCAUAAUUGAUUCUCUUGACCUUGUCCUCUUCGGGUUUUCUA---------AGUUUCUUUUU---UGGCUUGACAGAUUUUGCCUGAC
.....(((((...(((....)))..))))).............((((((..((((---------((((.......---.)))))...)))....)))))). ( -16.10)
>DroAna_CAF1 2587 92 - 1
CAAAUAUGAGCUGUCGAGUUCGCUGCCGUGGACC------ACUUUCGGUUUCCUGGCCUUCACCAAUUUCUUUGU---AGCUUUCGGAGGAUUUGCCAGAC
.......(((((....)))))...((((..((((------......))))..).)))......(((.(((((((.---......))))))).)))...... ( -20.50)
>consensus
CUCAUAAGAGCUUUCAUGAUCGAUUCUCUUGACCUUAUCCUCUUCGGGUUUUCUA_________AGUUUCUUUUU___UGGCUUGGAAGCUUUUGCCUGAC
....(((((((.((.......)).)))))))............((((((.............................................)))))). ( -2.96 =  -3.96 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:57:27 2006