| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 21,162,721 – 21,162,836 |
| Length | 115 |
| Max. P | 0.939369 |
| Location | 21,162,721 – 21,162,836 |
|---|---|
| Length | 115 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 80.64 |
| Mean single sequence MFE | -30.97 |
| Consensus MFE | -21.43 |
| Energy contribution | -21.27 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.30 |
| Mean z-score | -2.68 |
| Structure conservation index | 0.69 |
| SVM decision value | 1.28 |
| SVM RNA-class probability | 0.939369 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 21162721 115 + 27905053 CAGCCAAAUAUUGUGCUCCCUGUGCGAUAUUUCGCUAUCUAGCUUAUCGCAACUUCGCCUUCACUUAAUAACCCACCAACAUGAUUUGAAUGGCAUUAGCCCGGAGUACAAUUCC .........((((((((((...(((((((....(((....))).))))))).....(((((((.......................)))).)))........))))))))))... ( -29.40) >DroPse_CAF1 16381 115 + 1 CAGGCAAAUCAUCUGUUGCUUGUGCGAUGCCCAGCUUCCCAGCUUAAGGCAGCUGCGCGCUCACCUUGCCACCCAUCGACAUGGAUUGAGUGGCAUUGAUCCGGAGCAGAAUUCU .((((((........))))))(((((.((((.((((....))))...))))..)))))((((....(((((((.(((......))).).))))))........))))........ ( -37.60) >DroSec_CAF1 7186 115 + 1 CAACCAAAUAUUGUGCUCUCUGUGCGAUACCUCGCUAUCUAGCUUAUCGCAACUUCGCCUUCACUUAAUCACACAUCAACAUGAUUUAAAUGGCAUUAGUCCGGAGUACAAUUCU .........((((((((((...(((((((....(((....))).))))))).....(((.......(((((..........))))).....)))........))))))))))... ( -26.90) >DroSim_CAF1 7166 115 + 1 CAACCAAAUAUUGUGCUCUCUGUGCGAUACCUCGCUAUCUAGCUUAUCGCAACUUCGCCUUCACUUAAUCACACAUCAACAUGAUUUAAAUGGCAUUAGUCCGGAGUACAAUUCU .........((((((((((...(((((((....(((....))).))))))).....(((.......(((((..........))))).....)))........))))))))))... ( -26.90) >DroEre_CAF1 7177 115 + 1 CAACCAAAUAUUGUGCUCUCUCUGCGAUACCUCGCUAACAAGCUUAUCGCAACUUCGCCUUCACUUAAUCACACACCAACAUGAUUUGAAUGGCAUUAAUCCGGAGUACAAUUCU .........((((((((((...(((((((....(((....))).))))))).....(((((((...(((((..........))))))))).)))........))))))))))... ( -29.30) >DroPer_CAF1 21372 115 + 1 CAGGCAAAUCAUCUGUUGCUUGUGCGAUGCCCAGCUUCCCAGCUUAAGGCGGCUGCGCGCUCACCUGGCCACCCAUCGACAUGGAUUGAGUGGCAUUGAUCCGGAGCAGAAUUCU .((((((........))))))(((((.((((.((((....))))...))))..)))))((((.....((((((.(((......))).).))))).........))))........ ( -35.74) >consensus CAACCAAAUAUUGUGCUCCCUGUGCGAUACCUCGCUAUCUAGCUUAUCGCAACUUCGCCUUCACUUAAUCACACAUCAACAUGAUUUGAAUGGCAUUAAUCCGGAGUACAAUUCU ...........((((((((...(((((((....(((....))).))))))).....(((((((...(((((..........))))))))).)))........))))))))..... (-21.43 = -21.27 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:57:26 2006