Locus 7894

Sequence ID 3R_DroMel_CAF1
Location 21,158,380 – 21,158,500
Length 120
Max. P 0.683136
window12712

overview

Window 2

Location 21,158,380 – 21,158,500
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 72.61
Mean single sequence MFE -45.18
Consensus MFE -16.47
Energy contribution -18.75
Covariance contribution 2.28
Combinations/Pair 1.38
Mean z-score -2.02
Structure conservation index 0.36
SVM decision value 0.31
SVM RNA-class probability 0.683136
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21158380 120 + 27905053
ACAAAUCUUGCACUGGACGCUCUUGGGACCCGCCGGCUUUGACGCAUCCGCUAGCAAGGUUUCAGCCAGAGGUAGGUCCUGACCAGUGAAUCCGUGUCUCUGUAAAUGCUUGUACAGCAG
.........((((.(((((((.(..(((((..((((((..(((((........))...)))..))))...))..)))))..)..))))..)))))))(((((((........))))).)) ( -36.00)
>DroPse_CAF1 11624 120 + 1
ACAGAUCUUGCACUGGACAGUCUUUGGGCCCGAUGGCUUGGCUGCAUCGGCCAGUAAUGUCUCUGCAAGAGGCAAAUCUUCGCCGGUGAAGCCAUGCCGUUCGACAUGCUUGUGCAAGAG
.....((((((((.((.(((((...(....)((((((.(((((.(((((((.((...((((((.....))))))...))..))))))).))))).)))))).))).)))).)))))))). ( -54.90)
>DroGri_CAF1 36098 120 + 1
GCAAAGUUUGCAGACAAUCGUCUUCGUACCGGAUGGCUUGGCGGCAUCCGCCAGCAGUGUCUCUGCCAGUGGCAGAUCCUCUCCACUAAAGCCGUGACGCUGCACAUGCUUGUGCAACAG
(((.....)))((((....))))..((((.(((((...((((((...))))))((((((((.(.((.(((((.((.....)))))))...)).).)))))))).))).)).))))..... ( -46.20)
>DroWil_CAF1 8789 120 + 1
ACAGAUUUUGCAUUGAAUGUUCUUCGGCCCUAAGGGUUUGGCUGCAUCGGCCAACAAUGUUUCAGCCAAGGGUAAGUCUUGCCCACUGAAACCAUGGCGUUGGAGAUGCUUAUGAAGCAG
....................((((((((((.......(((((((...)))))))....(((((((....(((((.....))))).)))))))...)).))))))))((((.....)))). ( -34.90)
>DroAna_CAF1 876 120 + 1
GCACAGCUUGCACUGGAUGGUUUUCGGCCUGGUCGCCUUUGCGGCAUCAGCCAAGAGAGUUUCUGCCAACGGCAGGUCAUCGCCACUAAAUCCAUGGCGCUUGACGUGCUUGUGCAACAA
((((((...((((.((((..((((.(((.((((.(((.....))))))))))))))..))))(((((...)))))((((.(((((.........)))))..))))))))))))))..... ( -44.30)
>DroPer_CAF1 16533 120 + 1
ACAGAUCUUGCACUGGACAGUCUUUGGGCCCGAUGGCUUGGCUGCAUCGGCCAGUAAUGUCUCUGCAAGAGGCAAAUCUUCGCCGGUGAAGCCAUGCCGCUCGACAUGCUUGUGCAAGAG
.....((((((((.((.(((((...((((.....(((.(((((.(((((((.((...((((((.....))))))...))..))))))).))))).)))))))))).)))).)))))))). ( -54.80)
>consensus
ACAGAUCUUGCACUGGACGGUCUUCGGACCCGAUGGCUUGGCUGCAUCGGCCAGCAAUGUCUCUGCCAGAGGCAAAUCUUCGCCACUGAAGCCAUGCCGCUGGACAUGCUUGUGCAACAG
.......((((((.((...(((....(((...((((((((((((...)))))..................(((........)))....))))))))))....)))...)).))))))... (-16.47 = -18.75 +   2.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:57:23 2006