Locus 7893

Sequence ID 3R_DroMel_CAF1
Location 21,146,375 – 21,146,486
Length 111
Max. P 0.684777
window12711

overview

Window 1

Location 21,146,375 – 21,146,486
Length 111
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 79.83
Mean single sequence MFE -22.98
Consensus MFE -10.98
Energy contribution -11.62
Covariance contribution 0.64
Combinations/Pair 1.08
Mean z-score -2.09
Structure conservation index 0.48
SVM decision value 0.31
SVM RNA-class probability 0.684777
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21146375 111 - 27905053
AACG-AAUGAAGAUAACCCCCUCAUUAUAACAGAAGAGCUAUCUGCAAAAUUCGGAAGAGCAAACUACACAACCG-------UAUACCUUAUAAGGCAUGUG-AACAGGGUAGCAAAACA
....-(((((.(.......).)))))...........(((((((......(((....))).......((((.((.-------((((...)))).))..))))-....)))))))...... ( -18.90)
>DroSec_CAF1 5395 112 - 1
AACAAAAUGAAGAUAACCGCCUCAUUAUAACAGAAAAGCUAUCUGCAAAGUUUGGAAGAGCAAACUACUCAACCA-------UAUGCCAUAUAAGGCAUGUG-AACAGGGUAGCAAAACA
.....(((((.(.......).)))))...........(((((((....((((((......)))))).......((-------((((((......))))))))-....)))))))...... ( -27.50)
>DroSim_CAF1 6268 112 - 1
AACAAAAUGAAGAUAACCGCCUCAUUAUAACAGAAAAGCUAUCUCCAAAGUUCGGAAGAGCAAACUACACAACCA-------UAUGCCAUAUAAGGCAUGCG-AACAGGGUAGCAAAACA
.....(((((.(.......).)))))...........(((((((.....((((....))))..............-------((((((......))))))..-....)))))))...... ( -24.60)
>DroEre_CAF1 5837 118 - 1
AGCC-AAUGAAGACAACUCUCUUCUGAUAUCAGAAAAGCUAUCUGCUCGGUUCGGAAGAGCAAACUACAGAACCAAAUCGCAUUUCCCAAAGAAUUCAUGUG-AACAGGGUAGCAAAACA
....-................(((((....)))))..(((((((....(((((.(.((......)).).)))))...(((((((((.....)))...)))))-)...)))))))...... ( -25.70)
>DroYak_CAF1 5935 112 - 1
AACG-AAUGAAGACAACUCUCCUCUGAUAUCAAAAAAGCUAUCUG-------CGAAAGAGCAAACUACGGAAGCAAAUCCCAUUUCCCAUAUAAGGCAUGUGGAACAGGGUAGCAAAACA
....-.............((.(((((...........(((...((-------(......)))..(....).))).....((((...((......))...))))..))))).))....... ( -18.20)
>consensus
AACA_AAUGAAGAUAACCCCCUCAUUAUAACAGAAAAGCUAUCUGCAAAGUUCGGAAGAGCAAACUACACAACCA_______UAUCCCAUAUAAGGCAUGUG_AACAGGGUAGCAAAACA
.....................................(((((((.....((((....)))).....................................((.....)))))))))...... (-10.98 = -11.62 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:57:22 2006