Locus 7892

Sequence ID 3R_DroMel_CAF1
Location 21,144,332 – 21,144,452
Length 120
Max. P 0.554136
window12710

overview

Window 0

Location 21,144,332 – 21,144,452
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 86.17
Mean single sequence MFE -38.18
Consensus MFE -27.06
Energy contribution -27.14
Covariance contribution 0.08
Combinations/Pair 1.14
Mean z-score -1.67
Structure conservation index 0.71
SVM decision value 0.04
SVM RNA-class probability 0.554136
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21144332 120 + 27905053
GAGAUCAUUUGAUAUUUUACUCCAAGGCACCACGAUGCUGCAGCCAAGGUAAGACAACUUUCAUAUGCCUGCGGUAUCUGGGAUUGGUGUAGAUGGAAUUCGUAAAGUUUGAAUGCUCGU
(((..((((..(.(((((((((((..((((((.((((((((((.((..(.(((....))).)...)).))))))))))......))))))...))))....))))))))..))))))).. ( -38.00)
>DroSec_CAF1 3413 120 + 1
GAGACCAUUUGAUAUUUUACUCCAGGGCCCCUCGAUGCUGCAGCCAAGGUAAGACAACUUCCAUAUGCCUGCGGUAUCUGGGAUUGGUGUAGAUGGAAUUCGUAAAGUUGGAAUGGUCUU
((((((((((.(.((((((((((((.((((((.((((((((((.((.((.(((....)))))...)).)))))))))).)))...))).)...))))....)))))))).)))))))))) ( -44.60)
>DroSim_CAF1 4252 120 + 1
GAGACCAUUUGAUAUUUUACUCCAAGGCCCCUCGAUGCUGCAGCCAAGGUAAGACAACUUCCAUAUGCCUGCGGUAUCUGGGAUUGGUGUAGAUGGAAUUCGUAAAGUUGGAAUGAUCCU
..((.(((((.(.((((((((((((.((((((.((((((((((.((.((.(((....)))))...)).)))))))))).)))...))).)...))))....)))))))).))))).)).. ( -36.10)
>DroEre_CAF1 3969 120 + 1
GAGCGCAUUUGAUACUUUACUCCAGGGCACCUCGAUGGUGCAGCCAGGGCAGGACAACUUCCAUGUGUCCGCGGUAUCUGGGAUUGGUGUAGAUGGACUUUAUAAAGCUGGAAUGCUCAU
((((((((((.(((((..(..((((((((((.....))))).(((.((((((((.....)))...)))))..))).)))))..).))))))))))..(((....)))......))))).. ( -40.10)
>DroYak_CAF1 3999 112 + 1
--------UAGAUACUUUACUCCAGGGCCCCUCGGUGCUGCAGCCAAGGCAAUACAACUUCCGCAUGUCUGCGGUAUCUGGGAUUGGUGUAGAUGGAAUUCAUAAAGCUGGGAUGCUCAC
--------..((..((((((.((((..(((...((((((((((.((..((............)).)).)))))))))).))).)))).))))).)....))....(((......)))... ( -32.10)
>consensus
GAGACCAUUUGAUAUUUUACUCCAGGGCCCCUCGAUGCUGCAGCCAAGGUAAGACAACUUCCAUAUGCCUGCGGUAUCUGGGAUUGGUGUAGAUGGAAUUCGUAAAGUUGGAAUGCUCAU
...............(((((.((((....(((.((((((((((.((.((.(((....)))))...)).)))))))))).))).)))).)))))........................... (-27.06 = -27.14 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:57:20 2006