Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 21,138,807 – 21,138,923 |
Length | 116 |
Max. P | 0.969951 |
Location | 21,138,807 – 21,138,923 |
---|---|
Length | 116 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 79.61 |
Mean single sequence MFE | -27.41 |
Consensus MFE | -16.32 |
Energy contribution | -18.16 |
Covariance contribution | 1.84 |
Combinations/Pair | 1.16 |
Mean z-score | -2.47 |
Structure conservation index | 0.60 |
SVM decision value | 1.65 |
SVM RNA-class probability | 0.969951 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 21138807 116 + 27905053 AUAUGUGGCACUUCUUU--UAUUCCACACUUGGAAAAGUCAGUAAGCAUAUGACUCAAGCUAAUACUUAGAAGUGCUAAUGCCACUCUCAAGUGUU--UUCUUCGAUACUUGAGAAGAGU .....((((((((((..--..(((((....))))).(((((.........))))).............)))))))))).......(((((((((((--......)))))))))))..... ( -34.30) >DroSec_CAF1 3060 118 + 1 AUAUGUGGCACUUCUUU--UAUUUCACACUUAAAAAAGUCAGUAAGCUUAUGACUCAAGCUAAUACUUAAAACUGCUAAUGCCACUCUCAAGUGUUUUUUCUUCGAUACUUGAGAAGAGU ....(((((((((.(((--((.........))))))))).(((((((((.......)))))..)))).............)))))(((((((((((........)))))))))))..... ( -27.60) >DroSim_CAF1 2802 118 + 1 AUAUGCGGCACUUCUUU--UAUUUCACACUUAAAAAAGUCAGUAAGCGUAUGACUCAAGCUAAUUCUUAAAAUUGCUAAUGCCACUCUCAAGUGUUUUUUCUUCGAUACUUGAGAAGAGU ((((((...(((.((((--(.............)))))..)))..)))))).((((.(((.((((.....)))))))........(((((((((((........))))))))))).)))) ( -25.72) >DroEre_CAF1 3104 114 + 1 AUAUGUGGACCUUCAACUCAAUUCCACAGUGAUCU----CAAUAGAACUAUGACUCAAGCUAACACUCAGAACUGCUAAUGGCACCCUCAAGUGUU--UUCUUCAAUACUUGAAGAGAAU ...((((((.............))))))....(((----(..................((((.....((....))....))))....(((((((((--......))))))))).)))).. ( -21.52) >DroYak_CAF1 3751 116 + 1 AUUUGUGGAACUUUUCU--UAUUCCCCAGUAAGAAAAACAAGUAGGGCUAUGACUCAAGCUAAUACUCAGAGCUGCUUAAGCCACUUUCAAGUGUU--UUCCUUAAUACUUGAGGAGAAU ....((((...((((((--(((......)))))))))..((((((((((........))))...........))))))...))))(((((((((((--......)))))))))))..... ( -27.90) >consensus AUAUGUGGCACUUCUUU__UAUUCCACACUUAAAAAAGUCAGUAAGCCUAUGACUCAAGCUAAUACUUAGAACUGCUAAUGCCACUCUCAAGUGUU__UUCUUCGAUACUUGAGAAGAGU ....((((((..........................(((((.........)))))..(((..............)))..))))))(((((((((((........)))))))))))..... (-16.32 = -18.16 + 1.84)
Location | 21,138,807 – 21,138,923 |
---|---|
Length | 116 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 79.61 |
Mean single sequence MFE | -29.18 |
Consensus MFE | -18.11 |
Energy contribution | -18.55 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.31 |
Mean z-score | -2.18 |
Structure conservation index | 0.62 |
SVM decision value | 1.14 |
SVM RNA-class probability | 0.920979 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 21138807 116 - 27905053 ACUCUUCUCAAGUAUCGAAGAA--AACACUUGAGAGUGGCAUUAGCACUUCUAAGUAUUAGCUUGAGUCAUAUGCUUACUGACUUUUCCAAGUGUGGAAUA--AAAGAAGUGCCACAUAU .....((((((((.........--...))))))))(((((......((((((...((((.((((((((((((....)).)))))....)))))....))))--..))))))))))).... ( -30.60) >DroSec_CAF1 3060 118 - 1 ACUCUUCUCAAGUAUCGAAGAAAAAACACUUGAGAGUGGCAUUAGCAGUUUUAAGUAUUAGCUUGAGUCAUAAGCUUACUGACUUUUUUAAGUGUGAAAUA--AAAGAAGUGCCACAUAU .....((((((((..............))))))))((((((((....((((((((((..((((((.....)))))))))).((((....)))).)))))).--.....)))))))).... ( -28.64) >DroSim_CAF1 2802 118 - 1 ACUCUUCUCAAGUAUCGAAGAAAAAACACUUGAGAGUGGCAUUAGCAAUUUUAAGAAUUAGCUUGAGUCAUACGCUUACUGACUUUUUUAAGUGUGAAAUA--AAAGAAGUGCCGCAUAU .....((((((((..............))))))))((((((((......((((((......))))))...((((((((..........)))))))).....--.....)))))))).... ( -28.44) >DroEre_CAF1 3104 114 - 1 AUUCUCUUCAAGUAUUGAAGAA--AACACUUGAGGGUGCCAUUAGCAGUUCUGAGUGUUAGCUUGAGUCAUAGUUCUAUUG----AGAUCACUGUGGAAUUGAGUUGAAGGUCCACAUAU ....((((((((.(((.(((..--((((((((..(.(((.....))).)..))))))))..))).)))).(((((((((((----....))..)))))))))..)))))))......... ( -29.40) >DroYak_CAF1 3751 116 - 1 AUUCUCCUCAAGUAUUAAGGAA--AACACUUGAAAGUGGCUUAAGCAGCUCUGAGUAUUAGCUUGAGUCAUAGCCCUACUUGUUUUUCUUACUGGGGAAUA--AGAAAAGUUCCACAAAU ....((((((.(((...(((((--((((.......(((((((((((..............))))))))))).........))))))))))))))))))...--................. ( -28.83) >consensus ACUCUUCUCAAGUAUCGAAGAA__AACACUUGAGAGUGGCAUUAGCAGUUCUAAGUAUUAGCUUGAGUCAUAGGCUUACUGACUUUUCUAAGUGUGGAAUA__AAAGAAGUGCCACAUAU .....((((((((..............))))))))((((((((.....(((.((((....)))))))((((((..................))))))...........)))))))).... (-18.11 = -18.55 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:57:17 2006