| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 2,707,231 – 2,707,330 |
| Length | 99 |
| Max. P | 0.816264 |
| Location | 2,707,231 – 2,707,330 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 79.13 |
| Mean single sequence MFE | -22.80 |
| Consensus MFE | -13.30 |
| Energy contribution | -13.22 |
| Covariance contribution | -0.08 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.01 |
| Structure conservation index | 0.58 |
| SVM decision value | 0.67 |
| SVM RNA-class probability | 0.816264 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2707231 99 + 27905053 UUGGUAACUCCUAAAACCACCCAAGAA---AGAACAAAGCGUGAAAAAAUCCGCUUUUCAUCCCCA-CAAGGAUAUUCUUUUCGAGAAACCAUAGUUCUCUGU---------------- .((((..........)))).....(((---((((.((((((.((.....))))))))..((((...-...)))).))))))).(((((.......)))))...---------------- ( -18.70) >DroPse_CAF1 46367 116 + 1 CUCAUAACUCUUUAAACGCCCCAAAGAGCCAGGACAAAGCGUGAAAAAUUCAGCUUUUCAUCCCCGGCAGGGAAAUUCUUUUCGGGAAACCAUAGUUCUGUUCUGUAC---UGUUCUUC .......................(((((((((((((.((((((((((.......))))))).(((....)))...........((....))...))).)))))))...---.)))))). ( -27.20) >DroSim_CAF1 18537 99 + 1 UUGGGAACUCCUAAAACCACCCAAGAA---AGAACAAAGCGUGAAAAAAUCCGCUUUUCAUCCCCA-CAAGGAUAUUCUUUUCGGGAAAGCAUGGUUCUCUGU---------------- (((((....)))))((((((((..(((---((((.((((((.((.....))))))))..((((...-...)))).))))))).)))......)))))......---------------- ( -24.40) >DroEre_CAF1 18333 99 + 1 UUCGAAACUCGUAAAACCACCCAAGAA---AGGACAAAGCGUGAAAAAAUCCGCUUUUCAUCCCCA-CAAGGAUAUUCUUUUCGGGAAACCAUAGUUCUCUGU---------------- ...((((((...............(((---((((.((((((.((.....))))))))..((((...-...))))..)))))))((....))..)))).))...---------------- ( -22.40) >DroYak_CAF1 18387 99 + 1 UUCAAAACUUCUAAAACCACCCAAGAA---AGAACAAAGCGUAAAAAAAUCCGCUUUUCAUCCCCA-CAAGGAUAUUCUUUUCGGGAAACCAUAGUUCUCUGU---------------- .....((((...............(((---((((.((((((..........))))))..((((...-...)))).))))))).((....))..))))......---------------- ( -16.50) >DroPer_CAF1 46353 119 + 1 CUCAUAACUCUUUAAACGCCCCAAAGAGCCAGGACAAAGCGUGAAAAAUUCUGCUUUUCAUCCCCGGCAGGGAAAUUCUUUUUGGGAAACCAUAGUUCUGUUCUGUACUGUUCUUCCUU .......................(((((((((((((.((((((((((.......))))))).(((....)))..........(((....)))..))).)))))))....)))))).... ( -27.60) >consensus UUCAUAACUCCUAAAACCACCCAAGAA___AGAACAAAGCGUGAAAAAAUCCGCUUUUCAUCCCCA_CAAGGAUAUUCUUUUCGGGAAACCAUAGUUCUCUGU________________ ..............................(((((((((((.((.....))))))))...((((....((((.....))))..)))).......))))).................... (-13.30 = -13.22 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:09 2006