Locus 7888

Sequence ID 3R_DroMel_CAF1
Location 21,129,747 – 21,129,850
Length 103
Max. P 0.952728
window12704

overview

Window 4

Location 21,129,747 – 21,129,850
Length 103
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 73.40
Mean single sequence MFE -17.63
Consensus MFE -5.64
Energy contribution -6.48
Covariance contribution 0.84
Combinations/Pair 1.06
Mean z-score -2.11
Structure conservation index 0.32
SVM decision value 1.43
SVM RNA-class probability 0.952728
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21129747 103 + 27905053
UGAGAG-----------------AAUUUUAAAACAAACCGAAAAGCUCUUCAUUAUCUCUGGGUAAAAGCUUCUUAAGUCCCACACACCUACAAUCCCAUUCAAAAACGAAAUUCUCUCU
.(((((-----------------((((((..........(((......)))........((((.....(((.....))))))).........................))))))))))). ( -17.60)
>DroSec_CAF1 36608 118 + 1
UGAGAGUAUAUGUUGUGUAUACAAAUUUCAAAAUAAACCGAAAAGCUCUUCAUUAUCUCUGGGUAAAAGCUUUAUAAAUCCCACACAACUACAAUUCCAUUCGAAAACGAAAUUCUC--U
.((((((....(((((((.........((..........))((((((.....(((((....))))).)))))).........)))))))..........((((....))))))))))--. ( -20.30)
>DroSim_CAF1 43656 118 + 1
UGAGAGUAUAUGUUUUGUAUACGAAUUUCAAAACAAACCGAAAAGCUCUUCAUUAUCUCUGCGUAAAAGCUUUAUAAAUCCCACACAACUACAAUUCCAUUCGAAAACGAAAUUCUC--U
.((((((...(((((((...........)))))))......((((((....................))))))..........................((((....))))))))))--. ( -14.85)
>DroEre_CAF1 37255 109 + 1
UGAGAUAC---ACAACAAAGAUGAAUUUCAAAGCGAAACAAAAAGCUCUUCUUUAUCACGAGAAAAAAGCUUCCUAGGUCCCACACAAC------UGCAUUCAAAAACGAAAUUCUC--U
........---.......(((.(((((((.............(((((.(((((......)))))...)))))....(((........))------)............)))))))))--) ( -13.70)
>DroYak_CAF1 38780 108 + 1
UGAGAGAA---ACAACACAAAUUUAUUUCAAAACAAAACGAAAAGCUCCUCUUUAUCUGGAGGAAAAAGCUUUUUGAAUGCCAAACAAU------UUCAUUCAA-AACGAAAUUCUC--U
..((((((---...........................((((((((((((((......))))))....)))))))).............------....(((..-...))).)))))--) ( -21.70)
>consensus
UGAGAGAA___ACAACAUAUACGAAUUUCAAAACAAACCGAAAAGCUCUUCAUUAUCUCUGGGUAAAAGCUUUAUAAAUCCCACACAACUACAAUUCCAUUCAAAAACGAAAUUCUC__U
.((((....................................((((((.....(((((....))))).))))))..........................(((......)))..))))... ( -5.64 =  -6.48 +   0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:57:14 2006