Locus 7887

Sequence ID 3R_DroMel_CAF1
Location 21,128,866 – 21,128,986
Length 120
Max. P 0.808004
window12703

overview

Window 3

Location 21,128,866 – 21,128,986
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 90.17
Mean single sequence MFE -35.57
Consensus MFE -28.42
Energy contribution -29.58
Covariance contribution 1.16
Combinations/Pair 1.11
Mean z-score -1.69
Structure conservation index 0.80
SVM decision value 0.64
SVM RNA-class probability 0.808004
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21128866 120 + 27905053
ACCAGAAUUCGUUAAGGAAUUCAAAGAUGGCAUUUGUCUAGUUGAUAUUCCCUAUAUGAGCUCAGGCAUGGGCCCGUUUAAGGAUUUUUUGGGCCGCAUUCCUGAGUUGGACAGAUACAA
....((((((......)))))).....((..(((((((((..(.((((.....)))).)(((((((.(((((((((.............)))))).))).)))))))))))))))).)). ( -40.42)
>DroSec_CAF1 35681 120 + 1
ACCAGAAAUCGUUAGGAAAUUCAAAGAUGGCAUAUGUCUAGUUGAUAUUCCCUAUAUGAGCUCAGGCAUGGGUCCGUUUAAGGAUUUUUUGGGCCGCAUUCCUGGGUUGGACAGAUACAA
.(((....((((((((.(((((((....(((....)))...)))).))).)))).))))(((((((.(((((((((.............)))))).))).)))))))))).......... ( -35.92)
>DroSim_CAF1 42727 120 + 1
ACCAGAAUUCGUUAAGGAAUUCAAAGAUGGCAUAUGUCUAGUUGAUAUUCCCUAUAUGAGCUCAGGCAUGGGUCCGUUUAAGGAUUUUUUGGGCCGCAUUCCUGGGUUGGAAAGAUACAA
.((.((((((......))))))..(((((((.(((((((((((.((((.....)))).)))).))))))).).))))))..))(((((((.((((.((....)))))).))))))).... ( -36.80)
>DroEre_CAF1 36349 120 + 1
ACCAGAGUUCGUUAAGGAAUUCAAGGAUGGCAUUUGUCUAGUUGAUAUACCCUAUAUGAGCUCGGGCAUGGGUUCGUUUAAGGAUUUUUUGGGCCGCAUUCCUGAGUUGGCCAGCUACAA
....((((((......))))))..((.((((...((((.....))))...........((((((((.(((((((((.............)))))).))).)))))))).)))).)).... ( -34.82)
>DroYak_CAF1 37877 120 + 1
ACCAGAGUUAGUUAAGGAAUUCAAGGAUGGCCUCUGUCUCGUUGAUCUUCCCUUUAUGACCUGUGGAAUGGGUACGUUUAAGGACUUCUUAGGCCGCAUUCCUGAGUUGGAAAGAUACAA
.((((.((((.....((((.((((.((.(((....))))).))))..)))).....))))((..((((((.(...(((((((.....)))))))).))))))..)))))).......... ( -29.90)
>consensus
ACCAGAAUUCGUUAAGGAAUUCAAAGAUGGCAUAUGUCUAGUUGAUAUUCCCUAUAUGAGCUCAGGCAUGGGUCCGUUUAAGGAUUUUUUGGGCCGCAUUCCUGAGUUGGACAGAUACAA
.(((....((((...(((((((((....(((....)))...)))).)))))....))))(((((((.(((((((((.............)))))).))).)))))))))).......... (-28.42 = -29.58 +   1.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:57:13 2006