Locus 7886

Sequence ID 3R_DroMel_CAF1
Location 21,128,476 – 21,128,596
Length 120
Max. P 0.625524
window12702

overview

Window 2

Location 21,128,476 – 21,128,596
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 87.36
Mean single sequence MFE -26.52
Consensus MFE -19.96
Energy contribution -20.90
Covariance contribution 0.94
Combinations/Pair 1.15
Mean z-score -1.56
Structure conservation index 0.75
SVM decision value 0.19
SVM RNA-class probability 0.625524
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21128476 120 - 27905053
AUUCUCGCAAACUCCGGCAGGACCUUCCUAUACAUGCCUAUUUCAGUUUUAAAUAGAGCUGAACCGGCAAACAUUUCCAAAACCGUCUUAAUAAUGAGCGACUUGGAAAAGAAUCCCUUC
(((((.((........))(((.....))).....((((...(((((((((....)))))))))..))))....(((((((...((.((((....))))))..))))))))))))...... ( -27.20)
>DroSim_CAF1 42338 120 - 1
AUUCUCGAAAACUUUGGCAGGACCUUACUAUACAUGCCUAUUUCAGUUUUAAAGAGAGCUGAACCGGCAAACAUUUCCAGAACCGUCUUAAUAAUGAGAGACUUGGAGAAGGAACCCUUA
.(((((.((...(((((.((.......)).....((((...(((((((((....)))))))))..)))).......)))))...(((((........))))))).))))).......... ( -27.10)
>DroEre_CAF1 35963 120 - 1
AUCCUCGCGAACUCUGGCAGGACCUUUCUAUACAUGCCUAUUUCAGUUUUAAAUAGAGCUGAACCGGCAAACAUUUCCAAAACCGUUUUAAUAAUUAGAGACUUGGAGAAGGAUCCCUUC
.((((.((........))))))(((((.......((((...(((((((((....)))))))))..))))......(((((....(((((........)))))))))))))))........ ( -29.50)
>DroYak_CAF1 37478 120 - 1
AUUCUUGCGUACUCUGGCAGGACCUUUGUAUACAUGCCUAUUUCAGUUUUAAAUAUAGCUGAUUCUGCAAACAUUUCUAAAGCAUUUUUGAUAAUCAGAGACUUGAAAAAGGAUCCCUUC
..((((((........))))))(((((.......(((.....((((((........))))))....)))...............((((((.....))))))......)))))........ ( -22.30)
>consensus
AUUCUCGCAAACUCUGGCAGGACCUUUCUAUACAUGCCUAUUUCAGUUUUAAAUAGAGCUGAACCGGCAAACAUUUCCAAAACCGUCUUAAUAAUGAGAGACUUGGAAAAGGAUCCCUUC
.((((.((........))))))(((.........((((...(((((((((....)))))))))..))))....(((((((....(((((........)))))))))))))))........ (-19.96 = -20.90 +   0.94)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:57:12 2006