Locus 7883

Sequence ID 3R_DroMel_CAF1
Location 21,115,959 – 21,116,079
Length 120
Max. P 0.500000
window12698

overview

Window 8

Location 21,115,959 – 21,116,079
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 82.22
Mean single sequence MFE -37.75
Consensus MFE -24.64
Energy contribution -25.03
Covariance contribution 0.39
Combinations/Pair 1.31
Mean z-score -1.54
Structure conservation index 0.65
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21115959 120 - 27905053
AAUAUUAACACCUGCCGAGGCUCUAGACUGUGGUAGAUACAGGGCACAAAUAGCUUUGUAUCGUCGCCUGCCUCCCGGAGAAUUCUCUCGAAUUCGGGCAGAGCCUUAGUGUAAGCAUUA
.(((((((..(((((((((((....(((.......((((((((((.......)))))))))))))....))))).....((((((....)))))).))))).)..)))))))........ ( -41.51)
>DroSec_CAF1 23719 120 - 1
AAUAUUAACACCUGGCGAGGCUUCAAACUGUGGUAGAUGCAAGGCACAAAUAGCUUUGUAUCGUCUCCUGCCUCCCGGAGAAUUCUCUCAAACUCGGGCAAAGCCGUAGUGUAGGCUUUA
..........(((((.(((((..........((..((((((((((.......))))))))))....)).))))))).((((....))))......))).((((((........)))))). ( -38.70)
>DroSim_CAF1 29999 120 - 1
AAUAUUAACACCUGGCGAGGCUUCAGACUGUGGUAGAUGCAAGGCACAAAUAGCUUUGUAUCGUCGCCUGCCUCCCGGAGAAUUCUCUCAAACUCGGGCAAAGCCGUAGUGUAGGCUUUA
................(((((((.(.((((((((.((((((((((.......))))))))))...(((((......((((....))))......)))))...)))))))).)))))))). ( -41.10)
>DroEre_CAF1 23696 120 - 1
AAUAUCAUCACCUGGCGCGGCUCCAGACUGUGGUAGAUGCAGGGCACAAAAAGCUUUGUAUCGUCACCUGCCUCCCGAAGAAUUCUCUCAAACUCGGGCAGAGCUGUGGUGUAGGCUCUA
..........((((.(((((((((((...(((...((((((((((.......))))))))))..))))))...((((((((....))).....)))))..))))))))...))))..... ( -38.00)
>DroYak_CAF1 25066 120 - 1
AAUAUCAUCACCUGCCUCGGCUCCACACUGUGGUAGAUGCAGGGCACAAAUAGCUUGGUAUCGUCCCCUGCCUCCCGAAGGAUUCUCUCAAACUCGGGCAGCGCUGUGGUGUAGGAUCUA
.............((....))(((((((((..((.(((((..(((.......)))..))))).......((..(((((..((.....))....)))))..))))..)))))).))).... ( -35.80)
>DroMoj_CAF1 22529 120 - 1
AAUAUCAUCACUUGUCUUGGCUUCAUGCUGUGGUAGACGCAGGGCGCAUACAAUUUCGUCUCAUCUCCCACCUCACGGAGUAUUUGCUCAAACUUGGGCAGAAUCUUCGAGUACAUGUUG
.........((.((((((((((((.((..((((.(((.(..(((((.(......).)))))).))).))))..)).))))).((((((((....)))))))).....)))).))).)).. ( -31.40)
>consensus
AAUAUCAACACCUGGCGAGGCUCCAGACUGUGGUAGAUGCAGGGCACAAAUAGCUUUGUAUCGUCGCCUGCCUCCCGGAGAAUUCUCUCAAACUCGGGCAGAGCCGUAGUGUAGGCUUUA
..........((((.((.(((((........((..((((((((((.......))))))))))....))(((((....((((....))))......))))))))))....))))))..... (-24.64 = -25.03 +   0.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:57:07 2006