Locus 7881

Sequence ID 3R_DroMel_CAF1
Location 21,106,875 – 21,106,980
Length 105
Max. P 0.509442
window12696

overview

Window 6

Location 21,106,875 – 21,106,980
Length 105
Sequences 6
Columns 109
Reading direction reverse
Mean pairwise identity 81.57
Mean single sequence MFE -23.58
Consensus MFE -15.09
Energy contribution -15.87
Covariance contribution 0.78
Combinations/Pair 1.10
Mean z-score -1.51
Structure conservation index 0.64
SVM decision value -0.05
SVM RNA-class probability 0.509442
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21106875 105 - 27905053
AUGCUAAACGAUUCCCAGCCAUAUCAUUCCAAAAGCGAGUGAUUUGUUUGAA----UGCUAACGUCAAACGCUGGGAGAAAUCUUAGGGAUAUACGCAAAAAAAAGUAC
.(((.......((((((((...((((((((....).)))))))..((((((.----((....))))))))))))))))..(((.....)))....)))........... ( -27.40)
>DroSec_CAF1 15890 104 - 1
AUGCUAAACGAUUCCCAGCUAUAUCAUUCCAAAAGCGAGUGAUUUGUUUGAA----UGCUAACGUCAAACGCUGGGAGAAAUCUUAGGGAUAUACGCAAAA-AAGGUAC
.(((.......((((((((...((((((((....).)))))))..((((((.----((....))))))))))))))))..(((.....)))....)))...-....... ( -27.80)
>DroSim_CAF1 16380 104 - 1
AUGCUAAACGAUUCCCAGCUAUAUCAUUCCAAAAGCGAGUGAUUUGUUUGAA----UGCUAACGUCAAACGCUGGGAGAAAUCUUAGGGAUAUACGCGAAA-AAGGUAC
.(((.......((((((((...((((((((....).)))))))..((((((.----((....))))))))))))))))..(((.....)))....)))...-....... ( -27.10)
>DroEre_CAF1 14803 92 - 1
AUGCUAAACGAUUCCCAGCCAUAUCAUUCCAAAAGCGAGUGAUUCGUGUAAA----UGCGAACGUCAAAAACUGGCUGAA-----------AUACGCAAAA--AGGUAC
.((((...(((((..((((((..(((((((....).))))))(((((.....----.)))))..........)))))).)-----------)).)).....--.)))). ( -18.90)
>DroYak_CAF1 16437 103 - 1
AUGCUAAACGAUUCACAGCCAUAUCAUUCCAAAAGCGAGUGAUUUGUUCGAA----UGCUAACGUCAAACGCUGCGAGAAAUCCUAGGGAUAUACGCCAAA--AAGUAC
.((((......(((.((((((.((((((((....).))))))).))......----.((....)).....)))).)))..((((...))))..........--.)))). ( -18.50)
>DroAna_CAF1 14186 100 - 1
AUG------GGUUCACAGCUAAAUCAUCCCUACGGGGUGUGAUAUGUCAGAACGGCUGCUAACGUCAAACGCUGCGAAAAAUCUGAGGGAUAUACGA--AA-AAUAUAC
..(------(.(((.((((...((((((((....))).)))))..((..((.((........))))..)))))).)))...))..............--..-....... ( -21.80)
>consensus
AUGCUAAACGAUUCCCAGCCAUAUCAUUCCAAAAGCGAGUGAUUUGUUUGAA____UGCUAACGUCAAACGCUGGGAGAAAUCUUAGGGAUAUACGCAAAA_AAGGUAC
...........((((((((((.((((((((....).))))))).))...........((....)).....))))))))............................... (-15.09 = -15.87 +   0.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:57:05 2006