| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 21,105,588 – 21,105,693 |
| Length | 105 |
| Max. P | 0.658879 |
| Location | 21,105,588 – 21,105,693 |
|---|---|
| Length | 105 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 78.30 |
| Mean single sequence MFE | -26.90 |
| Consensus MFE | -21.86 |
| Energy contribution | -22.78 |
| Covariance contribution | 0.92 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.24 |
| Structure conservation index | 0.81 |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.658879 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 21105588 105 - 27905053 UCACUUU-GAAACACACAUUUCUCCAAGUGCAGCACAAGAUCUCACACAUGGGCUAAGAUAAGUGCACUGUGACAAGUGUGCGUCAUUUGGGGGUAC------UAUAUAAGC-------- .......-............((((((((((..(((((.....(((((..((.(((......))).)).)))))....)))))..))))))))))...------.........-------- ( -29.10) >DroSec_CAF1 14608 95 - 1 -----------AGAAGAAUUUCUCCAAGUGCAGCAAAAGAUCACACACAUGGGCUAAGUUAAAUGCACUGUGACAAGUGUGCGUCAUUAGGGGGUAC------UAUAUAAGC-------- -----------.........(((((.((((((.....((..((......))..))........))))))(((((........)))))..)))))...------.........-------- ( -17.42) >DroSim_CAF1 15039 108 - 1 UCAC------AAGAAGAAUUUCUCCAAGUGCAGCACAAGAUCACACACAUGGGCUAAGUUAAGUGCACUGUGACAAGUGUGCGUCAUUUGGGGGUAC------UAUAUAAGCCAGUCUAU ....------..........((((((((((..(((((...(((((....((.(((......))).)).)))))....)))))..))))))))))...------................. ( -28.30) >DroEre_CAF1 13455 111 - 1 UCGCUUAAGACAGAGGUAUUUCUCCAAGUGCAGCACAAGAUCACAUACAAGGCGA-AGCUAAGUGCGCUGUGACAAGUGUGCGUCAUUUGGGGGUAGUACGAGUAUAAAAGC-------- ..((((...((....(((((((((((((((..(((((...((((((((..(((..-.)))..)))...)))))....)))))..)))))))))).)))))..))....))))-------- ( -32.60) >DroYak_CAF1 15071 104 - 1 --ACUUUAGACAGAAGUAUUUCUCCAAGUGCAGCAAAAGAUCACAUACAAGGCAAAAGUUAAGUGCACUGUGACUAGUGUGCGUCACUUGGAGGUUG------UAUAAAAGC-------- --(((((.....)))))...(((((((((((.(((..((.((((((((..(((....)))..)))...)))))))..)))..).))))))))))...------.........-------- ( -27.10) >consensus UCACUU__GAAAGAAGAAUUUCUCCAAGUGCAGCACAAGAUCACACACAUGGGCUAAGUUAAGUGCACUGUGACAAGUGUGCGUCAUUUGGGGGUAC______UAUAUAAGC________ ....................((((((((((..(((((...((((((((.(((......))).)))...)))))....)))))..)))))))))).......................... (-21.86 = -22.78 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:57:04 2006