Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,706,665 – 2,706,757 |
Length | 92 |
Max. P | 0.545943 |
Location | 2,706,665 – 2,706,757 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 85.63 |
Mean single sequence MFE | -27.37 |
Consensus MFE | -18.28 |
Energy contribution | -19.50 |
Covariance contribution | 1.22 |
Combinations/Pair | 1.12 |
Mean z-score | -3.08 |
Structure conservation index | 0.67 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.545943 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2706665 92 + 27905053 UUGCUUGCCAGCUCUU-C--UGAAAACUAUUUCACUGCAAUCUAAAAACAGAUUUAGACUU--UGCGCUGUCAGCAGCAGAA-------AAUGCAGAAGAGCAG ..........((((((-(--((.......((((...((((((((((......))))))..)--)))((((....)))).)))-------)...))))))))).. ( -29.80) >DroSec_CAF1 16803 99 + 1 UUGCUUGCCAGCUCUU-C--UGAAAACUAUUUCACUGCAAUCUAAAAACAGAUUUAGACUU--UUCGCUGUCAGCAGCAGAAAAUGGAAAAUGCAGAAGAGCAG ..........((((((-(--((....((((((..((((..((((((......))))))...--...((.....)).)))).))))))......))))))))).. ( -29.30) >DroSim_CAF1 17882 99 + 1 UUGCUUGCCAGCUCUU-C--UGAAAACUAUUUCACUGCAAUCUAAAAACAGAUUUAGACUU--UUCGCUGUCAGCAGCAGAAAAUGGAAAAUGCAGAAGAGCAG ..........((((((-(--((....((((((..((((..((((((......))))))...--...((.....)).)))).))))))......))))))))).. ( -29.30) >DroEre_CAF1 17668 92 + 1 UUGCUUGCCAGCUCCU-C--CGAAAACUAUUUCACUGCAAUCUAAAAACAGAUUUAGACUU--UGCGCUGUCAGCAGCAUAC-------AAUGCAGAAGAGCAG ..........((((..-.--.((((....)))).(((((.((((((......))))))...--...((((....))))....-------..)))))..)))).. ( -23.40) >DroYak_CAF1 17848 92 + 1 UUGCUUGCCAGCUCCU-C--UGAAAACUAUUUCACUGCAAUCUAAAAACAGAUUUGGACUU--UGCGCUGUCAGCAGCAGAA-------AAUGCUGAAGAGCAG .(((((..((((...(-(--(((((....))))...((((((((((......))))))..)--)))((((....))))))).-------...))))..))))). ( -26.80) >DroAna_CAF1 16621 93 + 1 UUCCACGCCAACUUCUUCCUCGAAAACUAUUCGACUGCAAUCUAAAAACAGAUUUAGACUCGGUUGGCUGUCAGCAGCAGAA-------AG----GAGGAGCGC .....(((.....(((((((...........((((((...((((((......))))))..))))))((((....))))....-------))----)))))))). ( -25.60) >consensus UUGCUUGCCAGCUCCU_C__UGAAAACUAUUUCACUGCAAUCUAAAAACAGAUUUAGACUU__UGCGCUGUCAGCAGCAGAA_______AAUGCAGAAGAGCAG ..........((((((.....((((....)))).(((((.((((((......))))))........((((....)))).............))))))))))).. (-18.28 = -19.50 + 1.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:09 2006