Locus 7878

Sequence ID 3R_DroMel_CAF1
Location 21,096,262 – 21,096,382
Length 120
Max. P 0.708419
window12692

overview

Window 2

Location 21,096,262 – 21,096,382
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 87.17
Mean single sequence MFE -45.67
Consensus MFE -37.27
Energy contribution -38.55
Covariance contribution 1.28
Combinations/Pair 1.15
Mean z-score -2.09
Structure conservation index 0.82
SVM decision value 0.37
SVM RNA-class probability 0.708419
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21096262 120 + 27905053
UACUGCCCCGAUUGGCGGAUAUAGUGAAGAAUGAGCUCCACGAUUCUCGGAAGCUGUUUGCAGCUACUGUGGGUGUAGAUCGUGAGCGGGACUCGAUUAUGUUCGAGGACCUUUCGCUGG
..(((((......)))))...((((((((.....((((.(((((((.(((.(((((....))))).))).)......))))))))))((..(((((......)))))..)))))))))). ( -48.50)
>DroSec_CAF1 5497 120 + 1
UACUGCCCCGAUUGGCGGAUAUAGUGAAGAAUGAGCUCCACGAUUCUCGGAAGUUGUUUGCAGCUACUGUGGGUGUAGAUCGUGAGCGGGACUCGAUUAUGUUCGAGGACCUUUCGCUGG
..(((((......)))))...((((((((.....((((.(((((((.(((.(((((....))))).))).)......))))))))))((..(((((......)))))..)))))))))). ( -46.10)
>DroSim_CAF1 5646 120 + 1
UACUGCCCCGAUUGGCGGAUAUAGUGAAGAACGAGCUCCACGAUUCUCGGAAGUUGUUUGCAGCUACUGUGGGUGUAGAUCGUGAGCGGGACUCGAUUAUGUUCGAGGACCUUUCGCUGG
..(((((......)))))...((((((((.....((((.(((((((.(((.(((((....))))).))).)......))))))))))((..(((((......)))))..)))))))))). ( -46.10)
>DroEre_CAF1 4301 120 + 1
UACUGCCCCGAUUGGCGGAUAUAGUGAGGGAUGAGCUCCACGACUCCCGGAAGUUGUUUGCAGCUACUGUGAGUGUAGAUCGUGAGCGGGACUCGAUUAUGUUCGAGGACCUUUCGCUGG
..(((((......)))))...((((((((.....((((.(((((((.(((.(((((....))))).))).)))......))))))))((..(((((......)))))..)))))))))). ( -47.00)
>DroYak_CAF1 5699 120 + 1
UACUGCCCCGCUUGGCGGAUAUUGUGAGGAAUGAGCUCCACGAUUCCCGGAAGUUGUUUGCAGCUACUGUGAGUGCUGAUCGUGAGCGGGACUCGAUUAUGUUCGAGGACCUUUCGCUGG
..(((((......))))).....((((((.....((((.(((((((.(((.(((((....))))).))).))......)))))))))((..(((((......)))))..))))))))... ( -43.00)
>DroAna_CAF1 2701 120 + 1
UUCUGCCUCAGCUGGCGCAUAUUAUUAGGUCGGAUCUCAACGAUCCGAGAAAGCUUUUCGCCGGCACUGUCAACGUGGAUCGCGAGAGAGACUCGAUUAUCUUUGAGGAUCUGUCGCUGG
.((..(....((((((.............(((((((.....)))))))(((.....)))))))))...(....))..))..((((.(((..(((((......)))))..))).))))... ( -43.30)
>consensus
UACUGCCCCGAUUGGCGGAUAUAGUGAAGAAUGAGCUCCACGAUUCUCGGAAGUUGUUUGCAGCUACUGUGAGUGUAGAUCGUGAGCGGGACUCGAUUAUGUUCGAGGACCUUUCGCUGG
..(((((......)))))...((((((((.....((((.(((((((.(((.(((((....))))).))).)......))))))))))((..(((((......)))))..)))))))))). (-37.27 = -38.55 +   1.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:57:00 2006