Locus 7876

Sequence ID 3R_DroMel_CAF1
Location 21,094,977 – 21,095,097
Length 120
Max. P 0.619054
window12689

overview

Window 9

Location 21,094,977 – 21,095,097
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 89.92
Mean single sequence MFE -31.10
Consensus MFE -27.53
Energy contribution -27.37
Covariance contribution -0.16
Combinations/Pair 1.17
Mean z-score -1.29
Structure conservation index 0.89
SVM decision value 0.17
SVM RNA-class probability 0.619054
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21094977 120 - 27905053
UAAUCCAUUAUUGUAUCCACUAGCCGGUCUAUCUUGCUCUGAUAACGAUCGUUUAAAUACAAAUUCAGCUCCAGGGAGCGAGAUAGAGCCUGUAGUAGGUUCCUAAAGAUUGGCUGAAAG
....................(((((((((((((((((((((((....)))((......))..............)))))))))))(((((((...))))))).....))))))))).... ( -35.20)
>DroSec_CAF1 4213 120 - 1
UAAUCCAUUAUAGUAUCCACUAGCCGGUCUAUCUUCCUCUGAUAACGAUUUUUUAGAUCCAAAUUCAGCUCUAGGGAGCGAGAUAGAGCCUGUAGUAGGUUCCUAAAGAUUGGCUGAAAG
....................((((((((((......((((((....((((.....)))).....)))((((....)))))))...(((((((...)))))))....)))))))))).... ( -31.20)
>DroSim_CAF1 4369 120 - 1
UAAUCCAUUAUAGUAUCCACUAGCCGGUCUAUCUUCCUCUGAUAACGAUGUUUUAGAUCCAAAUUCAGCUCUAGGGAGCGAGAUAGAGCCUGUAGUAGGUUCCUAAAGAUUGGCUGAAAG
....................(((((((((((((((..(((((..........)))))..........((((....))))))))))(((((((...))))))).....))))))))).... ( -30.90)
>DroEre_CAF1 2970 120 - 1
UAAUCCAUUAUAUUAUCUACUAGGCGGUCUAUCUUGCUCUGAUAACGAUGUUUUAAAUCUGAAUUCAACUCUAAGGAGCGAGAUAGGGCCUGCAAAAGGUUCCUGAAGAUUGGCUGAAAG
....................(((.((((((.(((((((((......(((.......)))((....)).......)))))))))((((((((.....))).))))).)))))).))).... ( -30.70)
>DroYak_CAF1 4396 120 - 1
UAAUCCAUUAUAGUAUACACCAGGCGGUCUAUUUUGCUCUGAUAACAAUGUUUUAAAUCUGAAUUCAACUCUAGGGAGCGGGAUAGGGCCUGUAGAAGGUUCCGGAAGAUUGGCUGAAAG
....................(((.((((((((((((((((.........((((.......))))..........)))))))))))((((((.....)))))).....))))).))).... ( -27.51)
>consensus
UAAUCCAUUAUAGUAUCCACUAGCCGGUCUAUCUUGCUCUGAUAACGAUGUUUUAAAUCCAAAUUCAGCUCUAGGGAGCGAGAUAGAGCCUGUAGUAGGUUCCUAAAGAUUGGCUGAAAG
....................((((((((((((((((((((...........(((......)))...........)))))))))))((((((.....)))))).....))))))))).... (-27.53 = -27.37 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:56:57 2006