Locus 7874

Sequence ID 3R_DroMel_CAF1
Location 21,078,827 – 21,078,934
Length 107
Max. P 0.500000
window12686

overview

Window 6

Location 21,078,827 – 21,078,934
Length 107
Sequences 6
Columns 108
Reading direction reverse
Mean pairwise identity 88.88
Mean single sequence MFE -38.27
Consensus MFE -32.20
Energy contribution -33.40
Covariance contribution 1.20
Combinations/Pair 1.11
Mean z-score -1.56
Structure conservation index 0.84
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21078827 107 - 27905053
-GAUCCUGGAGCUGGAGGAGUCCGCAAGAACUGCGCUUGCGCUUGAGCCUGAGCUUGGGCAGCGUAGUAGUUGUACAUCUGGUUUUGGUUAAACAUGGGACUCCCGUA
-..(((.......)))(((((((((((..((((((((...(((..(((....)))..)))))))))))..)))).......((((.....))))...))))))).... ( -42.30)
>DroSec_CAF1 2878 107 - 1
-GAUCCUGGAGCUGGAGGAGUCCGCAAGAACUGCGCUUGGGCUUGAGCCUGAGCUUGAGCAGCGUAGUAAUUGUACAUCUGGUUUUGGUUAAACAUGGGACUUCCGUA
-..(((.......)))(((((((((((..((((((((...(((..(((....)))..)))))))))))..)))).......((((.....))))...))))))).... ( -40.00)
>DroSim_CAF1 2872 107 - 1
-GAUCCUGGAGCUGGAGGAGUCCGCAAGAACUGCGCUUGGGCUUGAGCCUGAGCUUGAGCAGCGUAGUAAUUGUACAUCUGGUUUUGGUUAAACAUGGGACUUCCGUA
-..(((.......)))(((((((((((..((((((((...(((..(((....)))..)))))))))))..)))).......((((.....))))...))))))).... ( -40.00)
>DroEre_CAF1 3539 101 - 1
-GAUCCUGGAGCUGGAGGAGUCCGCAAGAACUGCGCUUGUGCUUGAGC------CUGAGCAGCGUAGUAGUUGUACAUCUGGUUUUGGUUAAACAUGGGACUCCCGUA
-..(((.......)))(((((((((((..((((((((...((((....------..))))))))))))..)))).......((((.....))))...))))))).... ( -35.10)
>DroYak_CAF1 3521 107 - 1
-GAUCCUGCAGCUGGAGGAGUCCGCAAGAACUGCGCUUGCGCUUGAGCCUGAGCCUGAGCAGCGUAGUAGUUGUACAUCUGGUUUUGGUUAAACAUGGGACUCCCGUA
-..(((.......)))(((((((((((..((((((((...((((..((....))..))))))))))))..)))).......((((.....))))...))))))).... ( -38.20)
>DroAna_CAF1 3463 108 - 1
GACUCCCGGAGCUGGUGGAGUGCGCAUAAACUGAGCCUGAGCCUGAGCCUGAGCUUGCGCGGCAUAGUAGUUGUACAUCUGGUUCUGGUUAUAAAUUGGGCUGGCGUA
.((((((.......).)))))((((........((((..(.....((((.(((((((..((((......))))..))...))))).)))).....)..)))).)))). ( -34.00)
>consensus
_GAUCCUGGAGCUGGAGGAGUCCGCAAGAACUGCGCUUGCGCUUGAGCCUGAGCUUGAGCAGCGUAGUAGUUGUACAUCUGGUUUUGGUUAAACAUGGGACUCCCGUA
.....(((((((..((...((..((((..((((((((...((((((((....))))))))))))))))..)))))).))..)))))))......((((.....)))). (-32.20 = -33.40 +   1.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:56:54 2006