Locus 7873

Sequence ID 3R_DroMel_CAF1
Location 21,077,102 – 21,077,202
Length 100
Max. P 0.523193
window12685

overview

Window 5

Location 21,077,102 – 21,077,202
Length 100
Sequences 6
Columns 102
Reading direction reverse
Mean pairwise identity 79.27
Mean single sequence MFE -33.27
Consensus MFE -20.97
Energy contribution -20.62
Covariance contribution -0.36
Combinations/Pair 1.29
Mean z-score -1.36
Structure conservation index 0.63
SVM decision value -0.02
SVM RNA-class probability 0.523193
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21077102 100 - 27905053
GGUAAAUUUGACUUCGCCAGCUCUUGUCCAAGCAUUGCUGGUGAGCGCUGGCCAACAGCUCUUCGGAGUCGGCAAAUAAUCCCGGCAUAGAAU--UUCCCGA
((.((((((...(((((((((...(((....)))..))))))))).(((((((....((((....)))).))).........))))...))))--)).)).. ( -33.40)
>DroSec_CAF1 1156 100 - 1
GGUAAAGUUGACUCCGCCAGCUCUUGUCCAAGCAUUGCUGAUGAGCGCUGGACAACAGCUCUUCAGAGUCGCUAAAUAAUCCAGGCAUAGAGU--UUCCCGA
((.(((.(((((((.(..((((.(((((((.((...(((....)))))))))))).))))...).)))))(((..........)))...)).)--)).)).. ( -30.20)
>DroSim_CAF1 1156 100 - 1
GGUAAAGUUGACUCCGCCAGCUCUUGUCCAAGCAUUGCUGAUGAGCGCUGGACAACAGCUCUUCAGAGUCGCUAAAUAAUCCAGGCAUAGAGU--UUCCCGA
((.(((.(((((((.(..((((.(((((((.((...(((....)))))))))))).))))...).)))))(((..........)))...)).)--)).)).. ( -30.20)
>DroEre_CAF1 1811 94 - 1
CAUAAAGUUGACUGCGCCAGCUCUUGUCCGAGCACUGCUGGUGAGCGCUGGCCAACAGCUCUUCGGAGUCGCCAAAUAAGCCAGGCAA--------GCCCGA
.....(((((..((.((((((.((((.((.(((...))))))))).)))))))).)))))..((((.((.(((..........)))..--------)))))) ( -31.70)
>DroYak_CAF1 1784 100 - 1
GGUAAAGUUGACCGCGCCAGCUCUUGUCCGAGCACUGCUGGUGAGCGCUGGCCAACAGCUCUUCGGAGUCGCCAAAUAGUCCUGGCAAUAAAU--UGCUCGA
(((((.((((.....((((((.((((.((.(((...))))))))).)))))))))).((((....)))).((((........))))......)--))))... ( -34.10)
>DroPer_CAF1 7289 102 - 1
GGAAGAGCUGGCGACGCCAGUUCUUGUCCUGCCACUGGAGGCGGGCGCAGGCCAGCAGCUUGUCGGAGUCCUCAAACAAUCCAAUCAUUGGCUGAUAGCCAU
..((((((((((...))))))))))((((((((......)))))).)).(((...(((((((..(((............)))...))..)))))...))).. ( -40.00)
>consensus
GGUAAAGUUGACUCCGCCAGCUCUUGUCCAAGCACUGCUGGUGAGCGCUGGCCAACAGCUCUUCGGAGUCGCCAAAUAAUCCAGGCAUAGAAU__UUCCCGA
......((((.....((((((.((..((..(((...)))))..)).)))))))))).((((....))))................................. (-20.97 = -20.62 +  -0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:56:53 2006