Locus 7872

Sequence ID 3R_DroMel_CAF1
Location 21,075,366 – 21,075,462
Length 96
Max. P 0.953476
window12684

overview

Window 4

Location 21,075,366 – 21,075,462
Length 96
Sequences 6
Columns 97
Reading direction forward
Mean pairwise identity 68.17
Mean single sequence MFE -25.36
Consensus MFE -10.66
Energy contribution -10.13
Covariance contribution -0.53
Combinations/Pair 1.30
Mean z-score -2.10
Structure conservation index 0.42
SVM decision value 1.43
SVM RNA-class probability 0.953476
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21075366 96 + 27905053
AAAAGAAGUGGACGCACACGUCCACAAAAUGUUGGGAAAACUUCAGCCGGGAAGAGAGGUAAAUAAACGGCCAAAGUGUGCAUCGGAAUUUCCAAA-
.......(((((((....)))))))......(((((((.((((..((((..................))))..))))(.....)....))))))).- ( -24.67)
>DroPse_CAF1 5710 84 + 1
GAAGGAGGUGGACGAGCAAGUCCACAAAAUACUUGGCAAAUUGCCGCCCGGACAGUUGGUAAUUA-------------UGCAUUGGAAUUUCUUUCU
(((((((((((((......))))))......((..(((((((((((.(......).)))))))).-------------)))...))...))))))). ( -27.50)
>DroEre_CAF1 20 97 + 1
AAAAGAGGUGGACGCACAUGUCCACAAGUUGUUGGGAAAACUUCAGCUGGGAAGUGAGGUAAAUAAACGCCAAAAAUGUUCAUCGGAAUUUCCAAAG
......((((((((..(((.(((...(((((..((.....)).))))).))).))).(((........))).....))))))))((.....)).... ( -25.30)
>DroYak_CAF1 15 97 + 1
AAAAGAGGUGGACGCACAUGUUCACAAGAUAUUGGGAAAGCUCCAGCCGGGAAGUGAGGUAAAUAAACGCCCACAAUGUCCAUCGGAAUUUUCAAAG
......(((((((((.........(((....)))(((....))).))......(((.(((........))))))...)))))))............. ( -22.50)
>DroAna_CAF1 15 83 + 1
GAAGGAAGUGGACGAGCAGGUCCACAAACUCCUGGGCAAGAUGCCCCCAGGAAAAGAGGUGAGGAA------------UGCAUCGGAAUUCGGUG--
.......((((((......))))))....(((((((.........)))))))..............------------..(((((.....)))))-- ( -24.70)
>DroPer_CAF1 5707 84 + 1
GAAGGAGGUGGACGAGCAAGUCCACAAAAUACUUGGCAAAUUGCCGCCCGGACAGUUGGUAAUUA-------------UGCAUUGGAAUUUCUUUCU
(((((((((((((......))))))......((..(((((((((((.(......).)))))))).-------------)))...))...))))))). ( -27.50)
>consensus
AAAAGAGGUGGACGAACAAGUCCACAAAAUACUGGGAAAACUGCAGCCGGGAAAAGAGGUAAAUAA____________UGCAUCGGAAUUUCCAAA_
.......((((((......))))))......((.((..........)).)).............................................. (-10.66 = -10.13 +  -0.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:56:52 2006