Locus 787

Sequence ID 3R_DroMel_CAF1
Location 2,704,532 – 2,704,652
Length 120
Max. P 0.500000
window1255

overview

Window 5

Location 2,704,532 – 2,704,652
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 94.89
Mean single sequence MFE -29.75
Consensus MFE -27.47
Energy contribution -27.22
Covariance contribution -0.25
Combinations/Pair 1.09
Mean z-score -0.92
Structure conservation index 0.92
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2704532 120 + 27905053
UGCUUUUGAUGAUGAUGGCAUUUCCUUUGGUAGUUGCGUACGUCAUAGAUUAAUGGCAGCAAUCCAUCAAAAUCACUCGAUGGACACGACGAACAGCCGAAAAUUCGGAAGAAGCAGCCA
...............((((......((((((.(((.(((.((((((......))))).....((((((..........))))))...))))))).))))))..(((....)))...)))) ( -31.30)
>DroPse_CAF1 43967 120 + 1
UGCUUUUGAUGAUGAUGGCAUUUCCUUUGGUAGUUGCGUACGUCAUAGAUUAAUGACAGCAAUUCAUCAAAAUCACUCGAUGGACAUGACGAACAGCCGAAAAUUCAGGAGAAGAAACUG
..(((((((......((((...(((((((((((((((....(((((......))))).)))))).))))))(((....))))))..((.....)))))).....)))))))......... ( -26.30)
>DroEre_CAF1 15396 120 + 1
UGCUUUUGAUGAUGAUGGCAUUUCCUUUGGUAGUUGCGUACGUCAUAGAUUAAUGGCAGCAAUCCAUCAAAAUCACUCGAUGGACACGAAGAACAGCCGAAAAUUCGGAAGAAGCAGCAA
(((((((..(((...((((..(((.((((((.(((((....(((((......))))).)))))(((((..........))))))).)))))))..)))).....)))..))))))).... ( -31.60)
>DroYak_CAF1 15573 120 + 1
UGCUUUUGAUGAUGAUGGCAUUUCCUUUGGUAGUUGCGUACGUCAUAGAUUAAUGGCAGCAAUCCAUCAAAAUCACUCGAUGGACACGACGAACAGCCGAAAAUUCGGAAGAAGCAGCAA
(((((((..(((....((.....))((((((.(((.(((.((((((......))))).....((((((..........))))))...))))))).))))))...)))..))))))).... ( -31.00)
>DroAna_CAF1 14825 120 + 1
UGCUUUUGAUGAUGAUGGCAUUUCCUUUGGUAGUUGCGUACGUCAUAGAUUAAUGACAGCAAUUCAUCAAAAUCACUCGAUGGACAUGACGAACAGCCGAAAAUUCAGCAGAAGCAGUCA
((((((((.(((...((((...(((((((((((((((....(((((......))))).)))))).))))))(((....))))))..((.....)))))).....))).)))))))).... ( -32.00)
>DroPer_CAF1 43932 120 + 1
UGCUUUUGAUGAUGAUGGCAUUUCCUUUGGUAGUUGCGUACGUCAUAGAUUAAUGACAGCAAUUCAUCAAAAUCACUCGAUGGACAUGACGAACAGCCGAAAAUUCAGGAGAAGAAACCG
..(((((((......((((...(((((((((((((((....(((((......))))).)))))).))))))(((....))))))..((.....)))))).....)))))))......... ( -26.30)
>consensus
UGCUUUUGAUGAUGAUGGCAUUUCCUUUGGUAGUUGCGUACGUCAUAGAUUAAUGACAGCAAUCCAUCAAAAUCACUCGAUGGACACGACGAACAGCCGAAAAUUCAGAAGAAGCAGCCA
(((((((..(((....((.....))((((((.(((.(((..(((((......))))).....((((((..........))))))....)))))).))))))...)))..))))))).... (-27.47 = -27.22 +  -0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:08 2006