| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 21,064,777 – 21,064,874 |
| Length | 97 |
| Max. P | 0.983619 |
| Location | 21,064,777 – 21,064,874 |
|---|---|
| Length | 97 |
| Sequences | 4 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 70.90 |
| Mean single sequence MFE | -22.50 |
| Consensus MFE | -13.69 |
| Energy contribution | -13.88 |
| Covariance contribution | 0.19 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.99 |
| Structure conservation index | 0.61 |
| SVM decision value | 1.95 |
| SVM RNA-class probability | 0.983619 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 21064777 97 + 27905053 AUGACAAAGGCAUUAUUGCU----AAGGUGACUAUACUUGUGGAUAAAAGCGUAGUUAUACAUACGCUUAAAGUAUUAAAACAUCCAA---------CAAAUUGAAAUAA ....(((.((((....))))----.((....))....((((((((..(((((((........)))))))...((......)))))).)---------))).)))...... ( -20.30) >DroSec_CAF1 18107 106 + 1 AUGACAAAGGCAUUAUUGCU----AAAGUGACUAUACUUGUGGAUAGAAGUGUAGUUAUAAAGACGCUAAAAGUAUUAAAAUACCCAACUGUUGGGACAUAUUCAAAUAC ........((((....))))----...((((((((((((........)))))))))))).............(((((..((((((((.....))))...))))..))))) ( -22.50) >DroSim_CAF1 17418 106 + 1 AUGACAAAGGCAUUAUUGCU----AAAGUGACUAUACUUGUGGAUAGAAGUGUAGUUAUAAAGACGCUAAGAGUAUUAAAACAUCCAAGCGUUGGGACAUAUUCAGAUAC .(((....((((....))))----...((((((((((((........))))))))))))...((((((..((((......)).))..)))))).........)))..... ( -24.40) >DroEre_CAF1 18729 92 + 1 AUGACAAAGGCAAUAUUGCUAGCUAUGCUGACUACAGCUGUGGGCAGAGGUGUAGUUACGCAAGUAUUAA---------G---UCCAACUGUA--GACAAAUCCAG---- ..(((...((((....)))).(((.(((((((((((.((.(....).)).)))))))).)))))).....---------)---))........--...........---- ( -22.80) >consensus AUGACAAAGGCAUUAUUGCU____AAAGUGACUAUACUUGUGGAUAGAAGUGUAGUUAUAAAGACGCUAAAAGUAUUAAAACAUCCAACUGUU__GACAAAUUCAAAUAC ........((((....)))).......((((((((((((........))))))))))))................................................... (-13.69 = -13.88 + 0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:56:46 2006