Locus 7864

Sequence ID 3R_DroMel_CAF1
Location 21,045,171 – 21,045,283
Length 112
Max. P 0.941552
window12668

overview

Window 8

Location 21,045,171 – 21,045,283
Length 112
Sequences 6
Columns 115
Reading direction forward
Mean pairwise identity 75.18
Mean single sequence MFE -30.50
Consensus MFE -18.27
Energy contribution -18.47
Covariance contribution 0.20
Combinations/Pair 1.20
Mean z-score -1.93
Structure conservation index 0.60
SVM decision value 1.32
SVM RNA-class probability 0.941552
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21045171 112 + 27905053
--AUUAACUGGGUUUUGGACAAAAAA-UAAAUAACAACAAAACCAGGCUAUGGCAAAACGCAGUGGGUGCUCCUGCUCGUCAGCGGACUGCUGACCAUCACAUCCGUUGCAGCCC
--........(((((((.........-..........))))))).((((........(((.((..((....))..)))))(((((((.((.((.....))))))))))).)))). ( -31.91)
>DroSec_CAF1 2888 105 + 1
--UUUAACUGGGUUUUGGCCAAAAAA-------AACA-AAAAACAGGCUAUGGCAAGACGCAGUGGCUGCUCCUGCUCGUCAGCGGACUGCUGACCAUCACAUCCGUUGCAGCCC
--....((((.((((((.(((.....-------....-............))))))))).))))((((((........((((((.....))))))....((....)).)))))). ( -32.20)
>DroSim_CAF1 2975 105 + 1
--UUUAACUGGGUUUUGGCCAAAAAA-------ACAA-AAAAACAGGCUAUGGCAAGACGCAGUGGCUGCUCCUGCUCGUCAGCGGACUGCUGACCAUCACAUCCGUUGCAGCCC
--....((((.((((((.(((.....-------....-............))))))))).))))((((((........((((((.....))))))....((....)).)))))). ( -32.20)
>DroEre_CAF1 2848 96 + 1
UGAUUAAUUGGAAAUUA-AU---------------CA-AA--UCAGGCUAUGGCAAAACGCAAUGGGUGCUCCUGCUCGUCAGCGGACUGAUGACAAUCACAUCCGUUGCAGCCC
((((((((.....))))-))---------------))-..--...((((..(......)((((((((((....((.(((((((....)))))))))....)))))))))))))). ( -33.50)
>DroWil_CAF1 3158 94 + 1
------------------ACAAAAAUCUCAA--AAAA-AUAAACAGGCUAUGGUAAAACGCAAUGGCUGCUCUUGCUAAUAAGUGGACUGUUGACCAUAACUUCGGUUGCCGCUC
------------------.............--....-.......(((.(((((......(((((((..((..(....)..))..).)))))))))))(((....)))))).... ( -19.00)
>DroYak_CAF1 3028 97 + 1
--AUUAAUGGGAAUUUGGAC---------------CA-AAACCCAGGCUAUGGCAAAACGCAAUGGGUGCUGCUGCUCGUCAGCGGACUGCUGACCAUCACAUCCGUUGCAGCCC
--.....((((..((((...---------------))-)).))))((((..(......)((((((((((.((.((...((((((.....)))))))).)))))))))))))))). ( -34.20)
>consensus
__AUUAACUGGGUUUUGGACAAAAAA_______A_AA_AAAAACAGGCUAUGGCAAAACGCAAUGGCUGCUCCUGCUCGUCAGCGGACUGCUGACCAUCACAUCCGUUGCAGCCC
.............................................((((..(......)(((((((..((....))..((((((.....))))))........))))))))))). (-18.27 = -18.47 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:56:37 2006