Locus 7863

Sequence ID	3R_DroMel_CAF1
Location	21,039,545 – 21,039,637
Length	92
Max. P	0.985800

overview

Window 7

Location	21,039,545 – 21,039,637
Length	92
Sequences	5
Columns	93
Reading direction	reverse
Mean pairwise identity	95.56
Mean single sequence MFE	-18.60
Consensus MFE	-17.02
Energy contribution	-16.62
Covariance contribution	-0.40
Combinations/Pair	1.08
Mean z-score	-1.72
Structure conservation index	0.92
SVM decision value	2.02
SVM RNA-class probability	0.985800
Prediction	RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21039545 92 - 27905053
UUAGUGAACAUUCAGUGCUUCAUUGAUCAAUUCCAGGAUCUCUUUAGUUUACCAACUACAUCUAUGAGUAUUG-CUAUGUACAAACUAAAGUA
(((((..((((.(((((((.(((.((((........))))....(((((....))))).....))))))))))-..))))....))))).... ( -17.60)
>DroSec_CAF1 2956 92 - 1
UUAGUGAACAUUCAGUGCUUCAUUGAUCAAUUCCAGGAUCUCUUCAGUUUACCAACUACAUCUAUGAGUAUUG-CUAUGUACAAACUAAAGUA
(((((..((((.(((((((.(((.((((........)))).....((((....))))......))))))))))-..))))....))))).... ( -16.60)
>DroSim_CAF1 2961 92 - 1
UUAGUGAACAUUCAGUGCUUCAUUGAUCAAUUCCAGGAUCUCUUCAGUUUACCAACUACAUCUAUGAGUAUUG-CUAUGUACAAACUAAAGUA
(((((..((((.(((((((.(((.((((........)))).....((((....))))......))))))))))-..))))....))))).... ( -16.60)
>DroEre_CAF1 2990 93 - 1
UUAGUGAACAUUCAGUGCUCAGUUGAUCAAUUCCAGGAUCUCUUCAGUUUAUCAACUACAUCUAUGAGUAUUGAGUAUGUACAAACUAAAGUA
(((((..((((((((((((((((((((.((((..(((....))).)))).))))))........))))))))))..))))....))))).... ( -21.60)
>DroYak_CAF1 2981 92 - 1
UUGGUGAACAUUCAGUGCUCGGUUGAUCAAUUCCAGGAUCUCUUCAGUUUAUCAACUACAUCUAUGAGUAUUG-CUAUGUACAAACUAAAGUA
(((((..((((.(((((((((((((((.((((..(((....))).)))).)))))))........))))))))-..))))....))))).... ( -20.60)
>consensus
UUAGUGAACAUUCAGUGCUUCAUUGAUCAAUUCCAGGAUCUCUUCAGUUUACCAACUACAUCUAUGAGUAUUG_CUAUGUACAAACUAAAGUA
(((((..((((.((((((((....((((........)))).....((((....))))........))))))))...))))....))))).... (-17.02 = -16.62 +  -0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:56:36 2006