Locus 7862

Sequence ID 3R_DroMel_CAF1
Location 21,039,356 – 21,039,456
Length 100
Max. P 0.527859
window12666

overview

Window 6

Location 21,039,356 – 21,039,456
Length 100
Sequences 6
Columns 100
Reading direction forward
Mean pairwise identity 91.40
Mean single sequence MFE -40.70
Consensus MFE -33.22
Energy contribution -33.80
Covariance contribution 0.58
Combinations/Pair 1.09
Mean z-score -1.91
Structure conservation index 0.82
SVM decision value -0.01
SVM RNA-class probability 0.527859
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21039356 100 + 27905053
CUGCCGAAGUGCUAGCACGCGGAGUACUGUUCCCAUGCCAGGGAGCUCCUGCUGGCUCAGGAUCAGGAGUUUCACAUGUGAGCCUGGUGACUUCGUGGCU
..(((...(((....)))((((((((((((((.((((....(((((((((((((...)))...)))))))))).)))).))))..))).)))))))))). ( -40.30)
>DroSec_CAF1 2767 100 + 1
GUGCCGAAGUGCUAGCACGCGGAGUACUGUUCCCAUGCCAGGGAGCUCCUGCUGGCUCAGGAUCAGGAGUUUCACAUGUGAGCCUGGUGACUUCGUGGCU
..(((...(((....)))((((((((((((((.((((....(((((((((((((...)))...)))))))))).)))).))))..))).)))))))))). ( -40.30)
>DroSim_CAF1 2772 100 + 1
CUGCCGAAGUGCUAGCACGCGGAGUACUGUUCCCAUGCCAGGGAGCUCCUGCUGGCUCAGGAUCAGGAGUUUCACAUGUGAGCCUGGUGACUUCGUGGCU
..(((...(((....)))((((((((((((((.((((....(((((((((((((...)))...)))))))))).)))).))))..))).)))))))))). ( -40.30)
>DroEre_CAF1 2807 100 + 1
CUGCCGAAGUGCUAGCACGCGGAGUACUGUUCCCAUGCCAGGGAGCUCCUGCUGGCUCAGGAUCAGGAGUUUCACAUGUGAGACUGGUGACUUCGUGGCU
..(((...(((....)))(((((((.(((.(((...(((((((....))..)))))...))).))).(((((((....)))))))....)))))))))). ( -41.00)
>DroYak_CAF1 2792 100 + 1
CUGCCGAAGUGCUAGCACGCGGAGUACUGUUCCCAUGCCAGGGAGCUCCUGCUGGCUCAGGAUCAGGAGUUUCACAUGUGAGACUGGUGGCUUCGUGGCU
..(((...(((....)))(((((((.(((.(((...(((((((....))..)))))...))).))).(((((((....)))))))....)))))))))). ( -41.30)
>DroAna_CAF1 2584 94 + 1
CUGCCAAAGUGCUAGCACGCGGAGUUCGAUUCCCAUGGCCGGGAGCUCCUGCUAGCUGA---GCAGGAGUUCUACAUGUGAGAUCACUGACUUCGUA---
........(((....)))((((((((.(((..(((((....((((((((((((.....)---))))))))))).)))).)..)))...)))))))).--- ( -41.00)
>consensus
CUGCCGAAGUGCUAGCACGCGGAGUACUGUUCCCAUGCCAGGGAGCUCCUGCUGGCUCAGGAUCAGGAGUUUCACAUGUGAGACUGGUGACUUCGUGGCU
..(((...(((....)))((((((((((.(((.((((....((((((((((............)))))))))).)))).)))...))).)))))))))). (-33.22 = -33.80 +   0.58)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:56:35 2006