Locus 7858

Sequence ID 3R_DroMel_CAF1
Location 21,030,938 – 21,031,035
Length 97
Max. P 0.918009
window12659

overview

Window 9

Location 21,030,938 – 21,031,035
Length 97
Sequences 5
Columns 97
Reading direction forward
Mean pairwise identity 94.23
Mean single sequence MFE -22.29
Consensus MFE -20.44
Energy contribution -20.28
Covariance contribution -0.16
Combinations/Pair 1.12
Mean z-score -1.40
Structure conservation index 0.92
SVM decision value 1.12
SVM RNA-class probability 0.918009
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21030938 97 + 27905053
CGAUUAACUUGUUUUGUAAUCCCACAGCAAGCACCUUUUCAAUCCAUUCAAAGCGGUCGUCGAAACCGAUGACGACACAGCGAUUAAUUGGUUAAGA
(((((((((((((.((......)).)))))).....................((.(((((((.......)))))))...))..)))))))....... ( -20.70)
>DroSec_CAF1 35700 97 + 1
CGAUUAACUUGUUUUGUAAUCCCACAGCAAGCACCUAUUAAAUCCAUUCAAAGCCGUCGUCGAAACCGAUGACGACACAGCGAUUAAUUGGUUAAGG
(((((((((((((.((......)).)))))).....................(.((((((((....)))))))).).......)))))))....... ( -21.00)
>DroSim_CAF1 35870 97 + 1
CGAUUAACUUGUUUUGUAAUCCCACAGCAAGCACCUAUUAAAUCCAUUCAAAGCCGUCGUCGAAACCGAUGACGACACAGCGAUUAAUUGGUUAAGG
(((((((((((((.((......)).)))))).....................(.((((((((....)))))))).).......)))))))....... ( -21.00)
>DroEre_CAF1 39322 97 + 1
CGAUUAACUUGCGUUGUAAUCUCACAGCAGGCACCUAUUAAAUCCAUUGAAAGCCGUCGUCGAAACCGAUGACGACACAGCGAUUAAUUGGUUAAGG
(((((((.(((((((((......))))).(((....................)))(((((((....)))))))......)))))))))))....... ( -25.75)
>DroYak_CAF1 39347 97 + 1
CAAUUAACUUGUUUUGUAAUCCCACAGCAGGCAGCUAUUAAAUCCAUUCAAAGCCGUCGUCGCAACCGAUGACGACACAGCGAUUAAUUGAUUAAGA
(((((((.(((((.(((........(((.....)))..................((((((((....))))))))))).))))))))))))....... ( -23.00)
>consensus
CGAUUAACUUGUUUUGUAAUCCCACAGCAAGCACCUAUUAAAUCCAUUCAAAGCCGUCGUCGAAACCGAUGACGACACAGCGAUUAAUUGGUUAAGG
(((((((((((((.((......)).)))))).....................(.((((((((....)))))))).).......)))))))....... (-20.44 = -20.28 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:56:28 2006