Locus 7856

Sequence ID 3R_DroMel_CAF1
Location 21,022,644 – 21,022,751
Length 107
Max. P 0.548173
window12657

overview

Window 7

Location 21,022,644 – 21,022,751
Length 107
Sequences 5
Columns 119
Reading direction reverse
Mean pairwise identity 85.65
Mean single sequence MFE -39.10
Consensus MFE -25.85
Energy contribution -26.33
Covariance contribution 0.48
Combinations/Pair 1.18
Mean z-score -1.83
Structure conservation index 0.66
SVM decision value 0.03
SVM RNA-class probability 0.548173
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21022644 107 - 27905053
AUGUUCCAAGAAUC-------CGUGGCACAAUACGGCGCAUGGUCCGCUCUUCUGGAGCACGUGUUUGUGUUGUUGGAUCGGAGC-----AGGAGCAGCAAACUAUUGUGGCACCAUAU
..............-------.(((.(((((((.(..((.((.((((((((((..(((((((....)))))).)..))..)))))-----.))).))))...)))))))).)))..... ( -37.30)
>DroSec_CAF1 27456 107 - 1
AUGUUCCAAGAAUC-------CGUGGCACAAUACGGCGCAUGGUCCGCUCUUCUGGAGCACGUGCCUGUGUUGUUGGAUCGGAGC-----AGGAGCAGCAAACUAUUGUGGCACCAUAU
.((((((....(((-------((....(((((((((.(((((....((((.....)))).))))))))))))))))))).)))))-----)((.((.((((....)))).)).)).... ( -41.40)
>DroSim_CAF1 27593 107 - 1
AUGUUCCAAGAAUC-------CGUGGCACAAUACGGCGCAUGGUCCGCUCUUCUGGAGCACGUGCCUGUGUUGUUGGAUCGGAGC-----AGGAGCAGCAAGCUAUUGUGGCACCAUAU
.((((((....(((-------((....(((((((((.(((((....((((.....)))).))))))))))))))))))).)))))-----)((.((.((((....)))).)).)).... ( -42.20)
>DroEre_CAF1 27827 103 - 1
AUGUUGCAAGAAUC-------GGUGGCACAAUACGGCGCAUGGUCCGCUCUUCUGGAGCACGUGUUUGAGUUGCUGGAUUGGCCG-----AGGAG----UAACUAUUGUGGCACCAUAU
..............-------((((.((((((.((((.((..((((((....((.((((....)))).))..)).))))))))))-----((...----...)))))))).)))).... ( -34.70)
>DroYak_CAF1 30853 116 - 1
AUGUUCCCAGAAUAUACUCCAAGUGGCGCAAUACGGCGCAUGGUCCGCUCUUCUGGAGCACGUGUUUCAGUUGCUGGAUGGAUGGGAAGCAGGAG---CCAACUAUUGUGGCACCAUAU
.((((((((........(((.....((((......))))...((((((....(((((((....)))))))..)).))))))))))).))))((.(---(((.(....))))).)).... ( -39.90)
>consensus
AUGUUCCAAGAAUC_______CGUGGCACAAUACGGCGCAUGGUCCGCUCUUCUGGAGCACGUGUUUGUGUUGUUGGAUCGGAGC_____AGGAGCAGCAAACUAUUGUGGCACCAUAU
......................(((.(((((((.(((((.((.((((......)))).)).)))))..(((((((..................)))))))...))))))).)))..... (-25.85 = -26.33 +   0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:56:26 2006