Locus 7855

Sequence ID 3R_DroMel_CAF1
Location 21,020,850 – 21,020,942
Length 92
Max. P 0.536784
window12656

overview

Window 6

Location 21,020,850 – 21,020,942
Length 92
Sequences 5
Columns 98
Reading direction forward
Mean pairwise identity 90.47
Mean single sequence MFE -38.24
Consensus MFE -26.10
Energy contribution -27.38
Covariance contribution 1.28
Combinations/Pair 1.04
Mean z-score -2.30
Structure conservation index 0.68
SVM decision value 0.01
SVM RNA-class probability 0.536784
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21020850 92 + 27905053
GUCCAGCUUGGUCCUGUGGCAAGGACUGA--GGACU----GGACGCGGUCUACCUGGCCGCCGUCUGAGGCAAGAUGCGUAAGCACUAAUUUUUGUGU
((((((((..(((((......)))))..)--)..))----))))((((((.....))))))........(((((((((....))).....)))))).. ( -40.30)
>DroSec_CAF1 25650 92 + 1
GUCCAGCUUGGUCCUGUGGCCAGGACUCG--GGACU----GGACGCGGGCUACCUGGCCGCCGUCUGAGGCAAGAUGCGUAAGCACUAAUUUUUGUGU
((((((((((((((((....)))))).))--)).))----))))(((((((....))))(((......)))....)))....((((........)))) ( -41.10)
>DroSim_CAF1 25793 92 + 1
GUCCAGCUUGGUCCUGUGGCCAGGACUCG--GGACU----GGACGCGGGCUACCUGGCCGCCGUCUGAGGCAAGAUGCGUAAGCACUAAUUUUUGUGU
((((((((((((((((....)))))).))--)).))----))))(((((((....))))(((......)))....)))....((((........)))) ( -41.10)
>DroEre_CAF1 26017 87 + 1
GUCCUGCUUGGUCCUGUGGCAAGGACUCA-----------GGACGCGGGCUACCUGGCCGCCGUCUGAGGCAAGAUGCGUAAGCACUAAUUUUUGUGU
((((((...((((((......))))))))-----------))))(((((((....))))(((......)))....)))....((((........)))) ( -34.90)
>DroYak_CAF1 28770 98 + 1
GUUCUGCCUCGUCCUGUGGCAAGGACUCAAAGGACUCAAAGGACACUGGCUACCUGGCCGCCGUCUGAGGCAAGAUGCGUAAGCACUAAUUUUUGUGU
((..(((((((((((.(((.......))).))))).....((((..(((((....)))))..))))))))))..))((....)).............. ( -33.80)
>consensus
GUCCAGCUUGGUCCUGUGGCAAGGACUCA__GGACU____GGACGCGGGCUACCUGGCCGCCGUCUGAGGCAAGAUGCGUAAGCACUAAUUUUUGUGU
((((.....((((((......))))))....)))).......((((.((((....))))(((......))).....))))..((((........)))) (-26.10 = -27.38 +   1.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:56:25 2006