Locus 7854

Sequence ID 3R_DroMel_CAF1
Location 21,017,045 – 21,017,143
Length 98
Max. P 0.622004
window12655

overview

Window 5

Location 21,017,045 – 21,017,143
Length 98
Sequences 6
Columns 98
Reading direction forward
Mean pairwise identity 83.74
Mean single sequence MFE -40.10
Consensus MFE -30.18
Energy contribution -30.88
Covariance contribution 0.70
Combinations/Pair 1.19
Mean z-score -1.83
Structure conservation index 0.75
SVM decision value 0.18
SVM RNA-class probability 0.622004
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21017045 98 + 27905053
CGAGGCUGACGAGGCCACCGAAACCGAUCUCGAUGGCGAAGUGGAGCCGGAGGCAUCCGGGAAACCGGAGGAUCUCUCAGCCGCCGGCAAAGUGAUGA
((.((((((.((((((.(((...(((...(((....)))..)))...))).))).(((((....)))))....)))))))))..))............ ( -42.10)
>DroSec_CAF1 21844 98 + 1
CGAGGCUGACGAGGCCACCGAGCCCGAUCUCGAUGGCGAAGUGGAGACGGAGGCAUCCGGGAAACCGGAGGAUCUCUCAGCCGCCGGCAAAGUGAUGA
((.((((((.((((((.....((((..((((.((......)).))))..).))).(((((....))))))).))))))))))..))............ ( -43.10)
>DroSim_CAF1 21942 98 + 1
CGAGGCUGACGAGGCCACCGAGCCCGAUCUCGAUGGCGAAGUGGAGACGGAGGCAUCCGGGAAACCGGAAGAUCUCUCAGCCGCCGGCAAAGUGAUGA
((.((((((.((((((.((..(((((....))..))).....(....))).))).(((((....)))))....)))))))))..))............ ( -42.70)
>DroEre_CAF1 22117 98 + 1
CGAGGCAGACGAGGCCACCGAGCCCGAUCUCGACGGCGAAGUGGAGACGGAGGCGUCCGGGAAACCGGAGGAUCUCUCAGCCGCCGGCAAGGUGAUGA
...(((.((.((((((.....((((..((((.((......)).))))..).))).(((((....))))))).)))))).)))(((.....)))..... ( -41.60)
>DroYak_CAF1 24809 98 + 1
CGAGGCGGACGAGGCCACCGAGCCCGAUCUCGACGGCGAAGUGGAGACGGAGGCAUCCGGUAAACCGGAGGAUCUCUCGGCCGCCGGCAAGGUGAUGA
...(((((.(((((...((..((((..((((.((......)).))))..).))).(((((....)))))))...))))).)))))............. ( -42.00)
>DroPer_CAF1 33738 98 + 1
AGAAGGUGAUGAGGUGACAGACCCGGACCUGGAUGCAGAGAUCGAAGGCGACGUUCCCGGUAAGCCGGAAGAUUUGUCAGCAUCCGCAAAGCGAAUAA
...((((..((.(((.....))))).))))(((((((.(((((((((....).)))((((....))))..))))).)..))))))............. ( -29.10)
>consensus
CGAGGCUGACGAGGCCACCGAGCCCGAUCUCGAUGGCGAAGUGGAGACGGAGGCAUCCGGGAAACCGGAGGAUCUCUCAGCCGCCGGCAAAGUGAUGA
...((((((.((((((.(((...(((...(((....)))..)))...))).))).(((((....)))))....)))))))))................ (-30.18 = -30.88 +   0.70)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:56:24 2006