| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 21,016,859 – 21,016,950 |
| Length | 91 |
| Max. P | 0.794998 |
| Location | 21,016,859 – 21,016,950 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 91 |
| Reading direction | forward |
| Mean pairwise identity | 77.80 |
| Mean single sequence MFE | -35.35 |
| Consensus MFE | -18.89 |
| Energy contribution | -20.42 |
| Covariance contribution | 1.53 |
| Combinations/Pair | 1.33 |
| Mean z-score | -2.01 |
| Structure conservation index | 0.53 |
| SVM decision value | 0.60 |
| SVM RNA-class probability | 0.794998 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 21016859 91 + 27905053 GCAUACCCUGAAUCCCAAUGCCGCCACCUUGGCCGCCCUGCAAGCCAACCAACUGCAGCAGCAGGUGGCCACCACGGCCGCAGAGGGGGGA .....(((.....(((..(((.(((....((((((((((((..((.........)).))))..))))))))....))).)))..)))))). ( -38.30) >DroSim_CAF1 21756 91 + 1 GCAUACCCUGAAUCCCAAUGCCGCCACAUUGGCCGCCCUGCAAGCCAACCAACUGCAGCAGCAGGUGGCCACCACGGCUGCAGAGGGGGGA .....(((.....(((..(((.(((....((((((((((((..((.........)).))))..))))))))....))).)))..)))))). ( -38.30) >DroEre_CAF1 21931 91 + 1 GCACACCCUGAAUCCCAAUGCCGCCACCUUGGCCGCCCUGCAAGCCAACCAACUGCAGCAGCAGGUGGCCACCACGAGCGCAGAGGGAGGU ....(((.....((((..(((.(((....((((((((((((..((.........)).))))..))))))))....).)))))..))))))) ( -32.50) >DroYak_CAF1 24623 91 + 1 GCACACCCUGAAUCCCAAUGCCGCCACCCUGGCCGCCCUGCAAGCCAAUCAGCUGCAGCAGCAGGUGGCCAGCACGACUGCGGAGGGCGGA ....................(((((..((((((((((((((.(((......)))...))))..))))))))(((....)))))..))))). ( -40.20) >DroMoj_CAF1 70423 91 + 1 UCACUCCCUCAACCCGAACUCUGCCACGCUGGCGGCACUGCAAGCAAACUCACUGCACCAUCAGGCGUCGUCGACUACGGCGGAGACCACG ..................(((((((..(.(((((((.(((...(((.......))).....)))..))))))).)...)))))))...... ( -25.10) >DroAna_CAF1 22347 82 + 1 GCACAAUCUCAAUCCCAACGCCGCCACGCUGGCUGCUCUGCAGGCCAACUCGCUGCAGCAGCAGGCGGC---------GGCUGAGGGAGGA ......((((..((....(((((((..((((.((((...((((.....)).)).)))))))).))))))---------)...))..)))). ( -37.70) >consensus GCACACCCUGAAUCCCAAUGCCGCCACCCUGGCCGCCCUGCAAGCCAACCAACUGCAGCAGCAGGUGGCCACCACGACCGCAGAGGGAGGA ............((((..(((........((((((((((((.((........)))))).....))))))))........)))..))))... (-18.89 = -20.42 + 1.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:56:23 2006