Locus 7852

Sequence ID 3R_DroMel_CAF1
Location 21,014,869 – 21,014,970
Length 101
Max. P 0.549603
window12653

overview

Window 3

Location 21,014,869 – 21,014,970
Length 101
Sequences 5
Columns 109
Reading direction reverse
Mean pairwise identity 79.87
Mean single sequence MFE -36.16
Consensus MFE -27.14
Energy contribution -27.34
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.40
Structure conservation index 0.75
SVM decision value 0.03
SVM RNA-class probability 0.549603
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21014869 101 - 27905053
GAGUGUGUGUGUGUGUAUACACGGGGAGACAAUGGAAUAUGCUAAUUGGUGCGUUGCCUUCGCGCCGCGACGCGCCUGCUCCAAAAUGCAGCGGGCAACGC--------
.((((((((((((....)))))..(....)......))))))).......(((((((((..((((......))))((((........)))).)))))))))-------- ( -35.60)
>DroPse_CAF1 29077 95 - 1
--------------AGACAUACAAAGAGACAAUGGAAUAUGCUAAUUGGUGCGUUGCCUUCGCGCCGCGGCGCGCCUGCUCCAAAAUGCAGCGCGCAGCGCCGACGUCG
--------------.............(((..(((............((((((.......))))))((.((((((.(((........))))))))).)).)))..))). ( -36.00)
>DroEre_CAF1 19925 98 - 1
---UGUGUGUGUGUGUGUACACGGGGAGACAAUGGAAUAUGCUAAUUGGUGCGUUGCCUUCGCGCCGCGACGCGCCUGCUCCAAAAUGCAGCGCGCAACGC--------
---.((((((((((.((((.....((((.((.(((......)))...((((((((((.........))))))))))))))))....)))))))))).))))-------- ( -36.50)
>DroWil_CAF1 21328 101 - 1
--------ACACACACACACACAUAGAGACAAUGGAAUAUGCUAAUUGGUGCGUUGCCUUCGCGCCGCGGCGCGCCUGCUCCAAAUUGCAGCGCGCAGCGCCAACGUCG
--------...................(((..(((............((((((.......))))))((.((((((.(((........))))))))).)).)))..))). ( -36.70)
>DroPer_CAF1 31470 95 - 1
--------------AGACAUACAAAGAGACAAUGGAAUAUGCUAAUUGGUGCGUUGCCUUCGCGCCGCGGCGCGCCUGCUCCAAAAUGCAGCGCGCAGCGCCGACGUCG
--------------.............(((..(((............((((((.......))))))((.((((((.(((........))))))))).)).)))..))). ( -36.00)
>consensus
______________AGACACACAAAGAGACAAUGGAAUAUGCUAAUUGGUGCGUUGCCUUCGCGCCGCGGCGCGCCUGCUCCAAAAUGCAGCGCGCAGCGCC_ACGUCG
...............................................((((((.......))))))(((..((((((((........)))).))))..)))........ (-27.14 = -27.34 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:56:22 2006