Locus 7850

Sequence ID 3R_DroMel_CAF1
Location 21,012,915 – 21,013,007
Length 92
Max. P 0.789143
window12650

overview

Window 0

Location 21,012,915 – 21,013,007
Length 92
Sequences 5
Columns 97
Reading direction forward
Mean pairwise identity 86.66
Mean single sequence MFE -30.44
Consensus MFE -22.38
Energy contribution -22.74
Covariance contribution 0.36
Combinations/Pair 1.20
Mean z-score -1.97
Structure conservation index 0.74
SVM decision value 0.58
SVM RNA-class probability 0.789143
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21012915 92 + 27905053
AAAUGG-----CCAGACGGUUGGCCAUUACAGACAUACUGACGGGUAUGGCCAUUCCGGCAUACAUAUGUCCUGUCCUGACUAGGUGUGUGUAAGUG
.(((((-----((((....))))))))).....((((((....))))))(((.....))).((((((((.(((((....)).))))))))))).... ( -31.50)
>DroSec_CAF1 17729 91 + 1
AAAUGG-----CCAGACGGUUGGCCAUUACAGACAUACUGACGGGUAUGGCCAUUCCGGCAUACAUAUGUCCUGUCCUGGCUAGGUGUGUGUAAGU-
.(((((-----((((....))))))))).....((((((....))))))(((.....))).((((((((.(((((....)).)))))))))))...- ( -32.30)
>DroSim_CAF1 17795 91 + 1
AAAUGG-----CCAGACGGUUGGCCAUUACAGACAUACUGACGGGUAUGGCCAUUCCGGCAUACAUAUGUCCUGUCCUGGCUAGGUGUGUGUAAGU-
.(((((-----((((....))))))))).....((((((....))))))(((.....))).((((((((.(((((....)).)))))))))))...- ( -32.30)
>DroYak_CAF1 20056 92 + 1
AAAUGG-----CCAGACGGUUGGCCAUUACAGACAUACUGACGGGUAUGGCCAUUCCGGCAUACAUAUGUCCUGUCCCGGCUAGGUGUGUGUGUGUG
.(((((-----((((....)))))))))(((.((((((.(((((((((((((.....)))...))))...))))))((.....)).)))))).))). ( -35.80)
>DroAna_CAF1 18246 92 + 1
AAAAGGACAAACCAGACGGUUGGGUAUUACAAACAUAUAGAUAUGUAUGGUCAUUCCGGCAUACUUAUGUACU----UGUGUAGGUGAAUGUGUGU-
.....(((.((((....))))............((((((....)))))))))......(((((.((((.(((.----...))).)))).)))))..- ( -20.30)
>consensus
AAAUGG_____CCAGACGGUUGGCCAUUACAGACAUACUGACGGGUAUGGCCAUUCCGGCAUACAUAUGUCCUGUCCUGGCUAGGUGUGUGUAAGU_
............((.(((.(((((((..((((.((((((....))))))(((.....)))...........))))..))))))).))).))...... (-22.38 = -22.74 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:56:19 2006